Browse Element(s) Details


Os.15717.1.S1_at

Description gb:AK100851.1
DB_XREF= gi:32986060
TID=Os.15717.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123J02, full insert sequence.
FL= gb:AK100851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4521011/11Mpv17/PMP22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45249NANA8+28281083..28282271NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15717.1.S1_at--1048--10131Chr08:28256211..28256235 (25 bp)
TATGCGGGACCGTTTGGCCATTTTC
LOC_Os08g45210
Os.15717.1.S1_at--942--10371Chr08:28256231..28256255 (25 bp)
TTTTCTCCACAAGCTGATGGACAGG
LOC_Os08g45210
Os.15717.1.S1_at--4--5551Chr08:28256280..28256474 (25 bp)
GAAACTACAGCCAAGAAGGTCTTAG
LOC_Os08g45210
Os.15717.1.S1_at--606--6671Chr08:28257846..28257973 (25 bp)
GTTGCATCGTGCTGGGCAGTATTTC
LOC_Os08g45210
Os.15717.1.S1_at--231--4731Chr08:28257962..28257983 (22 bp)
GCTGGGCAGTATTTCTGAACCTGAA
LOC_Os08g45210
Os.15717.1.S1_at--324--5051Chr08:28257985..28258009 (25 bp)
GCAGCAAGGTCCATTGCCACTAGTA
LOC_Os08g45210
Os.15717.1.S1_at--136--1031Chr08:28258024..28258048 (25 bp)
AGGTAGCACGGCATGCTGTTGCTGC
LOC_Os08g45210
Os.15717.1.S1_at--488--1891Chr08:28258051..28258075 (25 bp)
ACGTTCTACTGGTCAGGACTCACTA
LOC_Os08g45210
Os.15717.1.S1_at--915--1291Chr08:28258109..28258133 (25 bp)
AGATGCCGTCATTTTACTCTTTCAG
LOC_Os08g45210
Os.15717.1.S1_at--209--9911Chr08:28258123..28258147 (25 bp)
TACTCTTTCAGTCTGCTTGTTGAAC
LOC_Os08g45210
Os.15717.1.S1_at--393--7011Chr08:28258154..28258178 (25 bp)
GTACTACGTACTAACTTTATCCCTG
LOC_Os08g45210
Target Sequence 
TATGCGGGACCGTTTGGCCATTTTCTCCACAAGCTGATGGACAGGTTTTTCAAGGGAAAGAAAGGAAAAGAAACTACAGC
CAAGAAGGTCTTAGTGGAGCAACTAACTGCGTCACCATGGAACAATATGATGTTTATGATGTACTATGGTCTGGTGGTTG
AAGGGAGACCTTTTAGTCAAGTGAAGAGCAAGCTCAAGAAAGACTACGCATCTGTCCAGTTGACAGCTTGGAAGTTCTGG
CCAATTGTTAGTTGGATAAACTATGAATACATGCCGCTCCAGCTCCGAGTTCTTTTCCACAGCTTTGTTGCATCGTGCTG
GGCAGTATTTCTGAACCTGAAAGCAGCAAGGTCCATTGCCACTAGTAAGAAGGCGTAAAACAGGTAGCACGGCATGCTGT
TGCTGCCGACGTTCTACTGGTCAGGACTCACTAAGAAGAAGAAACCGGACTCAAACGGCTAAGATTAGATGCCGTCATTT
TACTCTTTCAGTCTGCTTGTTGAACTAATTTGTACTACGTACTAACTTTATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis