Browse Element(s) Details


OsAffx.22867.1.S1_x_at

Description tigr:9629.m02213
TID=OsAffx.22867.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2299011/11expressed protein
LOC_Os08g451801/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein
LOC_Os01g23010NANA1+12928204..12928488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22867.1.S1_x_at--126--8171Chr01:12904553..12904577 (25 bp)
GGAACTGAGTATCTGGTCAAGCCAC
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--1032--1691Chr01:12904534..12904558 (25 bp)
AGCCACTTGGTGATGCAGAGGACGA
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--350--91Chr01:12904504..12904528 (25 bp)
ATTCCAGTGACTTCGAGCCAGATGA
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--452--6291Chr01:12904427..12904451 (25 bp)
GATGATTCCGCGAAGGCGCAATCCT
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--474--8671Chr01:12904280..12904304 (25 bp)
TGTGTCCTCTGCAGGGTGCTAGAAA
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--983--3011Chr01:12904221..12904245 (25 bp)
AATGCTTGTAGCTTTAGGACATCTG
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--681--8632Chr08:28242091..28242150 (24 bp)
TGTGGTTTAGGTTTAGCAGCTCAAA
LOC_Os08g45180
OsAffx.22867.1.S1_x_at--58--5991Chr01:12904166..12904190 (25 bp)
GAGACAGTCCATCATGTTAGTCGTT
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--887--6771Chr01:12904151..12904175 (25 bp)
GTTAGTCGTTAGTGCATACTGCTGA
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--159--6851Chr01:12904123..12904147 (25 bp)
GTTTGATTAACAGCCTCTTTGAGAA
LOC_Os01g22990
OsAffx.22867.1.S1_x_at--983--6011Chr01:12904074..12904098 (25 bp)
GAGAGGCTTGCTTTATGCTTTGTGT
LOC_Os01g22990
Target Sequence 
GGAACTGAGTATCTGGTCAAGCCACTTGGTGATGCAGAGGACGAGGAGCATTCCAGTGACTTCGAGCCAGATGAAAACGG
TGAGGGTGCCGAGGATGAAGAGATTGATGAGGACGATGATGGCGATGATGATTCCGCGAAGGCGCAATCCTCGTCGAAGA
GGAAGAGGTCGGGTGGCGACGATGAAGATGACGACGATGATGATGACGATGGTGATGATGATGATGATGNTANNNNNTCA
AAGCGATAGTTGAGCAGCTCATCTGGGGTCAGTTGTGTCCTCTGCAGGGTGCTAGAAAGAAAATAATCCTCTTGGGGAGA
AGATTGTTGGTAAATGCTTGTAGCTTTAGGACATCTGTGGTTTAGGTTTAGCAGCTCAAAAACTTGAGAGACAGTCCATC
ATGTTAGTCGTTAGTGCATACTGCTGATGTGTTTGATTAACAGCCTCTTTGAGAACATCATCTGTATGAGGAAAGATATG
AGAGGCTTGCTTTATGCTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis