Browse Element(s) Details


OsAffx.23347.1.S1_s_at

Description gb:NM_183882.1
DB_XREF= gi:34894891
GEN=B1140D12.11
TID=OsAffx.23347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1140D12.11 (B1140D12.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2300011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein
LOC_Os01g23010NANA1+12928204..12928488hypothetical protein
LOC_Os01g23020NANA1+12932851..12939580retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23347.1.S1_s_at--339--5912Chr09:13908595..13908621 (25 bp)
GAGCTCGAGGCGACATCACGTCAGG
NONE
OsAffx.23347.1.S1_s_at--1000--1892Chr09:13908583..13908602 (20 bp)
ACGTCAGGCTCCCAAAGCTGGCGTA
NONE
OsAffx.23347.1.S1_s_at--437--911Chr01:12915746..12915770 (25 bp)
AGGCTCCCAAAGCTGGCGTACAGCA
LOC_Os01g23000
OsAffx.23347.1.S1_s_at--925--4252Chr09:13908543..13908567 (25 bp)
CCGGTCGGCTGCTCGTCAAGCCAAG
NONE
OsAffx.23347.1.S1_s_at--389--7092Chr09:13908529..13908553 (25 bp)
GTCAAGCCAAGCCATGCACGCGGCG
NONE
OsAffx.23347.1.S1_s_at--15--4531Chr01:12915648..12915672 (25 bp)
GCCGCCGCCGACTAGGTTGTTTGCG
LOC_Os01g23000
OsAffx.23347.1.S1_s_at--29--4151Chr01:12915643..12915667 (25 bp)
CGCCGACTAGGTTGTTTGCGCGGTC
LOC_Os01g23000
OsAffx.23347.1.S1_s_at--930--4233Chr09:13908432..13908456 (25 bp)
CCGATGGTGTACACGCGCGGGAACT
NONE
OsAffx.23347.1.S1_s_at--1082--2153Chr09:13908427..13908446 (20 bp)
ACACGCGCGGGAACTCGTCCTTGAG
NONE
OsAffx.23347.1.S1_s_at--404--2551Chr01:12915584..12915608 (25 bp)
AACTCGTCCTTGAGCACGTCGAAGA
LOC_Os01g23000
OsAffx.23347.1.S1_s_at--755--1892Chr09:13908396..13908420 (25 bp)
ACGTCGAAGACGTCGGACTCGAGGT
NONE
Target Sequence 
GAGCTCGAGGCGACATCACGTCAGGCTCCCAAAGCTGGCGTACAGCACCGACCCGGTCGGCTGCTCGTCAAGCCAAGCCA
TGCACGCGGCGTCCTCTTCCCACAGGCTCAGCCCAGCGGCGCCGCCGCCGACTAGGTTGTTTGCGCGGTCGGCGCCGAGC
GGGCCGATGGTGTACACGCGCGGGAACTCGTCCTTGAGCACGTCGAAGACGTCGGACTCGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23347.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis