Browse Element(s) Details


OsAffx.21416.1.S1_at

Description gb:NM_192529.1
DB_XREF= gi:34912141
GEN=P0712E02.13
TID=OsAffx.21416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0712E02.13 (P0712E02.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g328703/11hypothetical protein
LOC_Os08g136503/11expressed protein
LOC_Os01g229542/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21416.1.S1_at--356--3371Chr01:23094087..23094111 (25 bp)
CACCATGACGGCTTGAGTTTCGCAT
NONE
OsAffx.21416.1.S1_at--987--6071Chr01:23094073..23094097 (25 bp)
GAGTTTCGCATCTGAGGACGTCGTC
NONE
OsAffx.21416.1.S1_at--1015--1891NONE
ACGTCGTCCTGAGCATCAGAAAAAG
NONE
OsAffx.21416.1.S1_at--1153--57927Chr12:25197789..25197813 (25 bp)
GTCCTAGGTAGTGAAAGACCGAATT
NONE
OsAffx.21416.1.S1_at--941--70749Chr12:25197821..25197843 (23 bp)
GTCAATTCGGTTAGTCTCCTCGGAC
NONE
OsAffx.21416.1.S1_at--858--100319Chr11:18916635..18916662 (25 bp)
TAGTCTCCTCGGACCGAAAAGACCG
LOC_Os11g32870
OsAffx.21416.1.S1_at--898--5554Chr12:1902202..1902486 (25 bp)
GAAAGACCAAAGACCGAGACAGAAA
NONE
OsAffx.21416.1.S1_at--430--9471Chr01:23090561..23090585 (25 bp)
TCTGCTCCGGCAAAAAACGAATACA
NONE
OsAffx.21416.1.S1_at--560--3091Chr01:23090542..23090566 (25 bp)
AATACAGATAACTTTCGGATCGGAT
NONE
OsAffx.21416.1.S1_at--5--9911Chr01:23090497..23090521 (25 bp)
TACGGATATTTTCTTCCGGATACGA
NONE
OsAffx.21416.1.S1_at--793--1713Chr01:37066512..37066531 (20 bp)
ACGAATATGGTATCGGAGTTTCCGT
NONE
Target Sequence 
CACCATGACGGCTTGAGTTTCGCATCTGAGGACGTCGTCCTGAGCATCAGAAAAAGACCGAACCGAAAGACCGAACCGAA
AAGACCGAGACCGAGACCGAGAAATTCGGTCATCAATTCGGTCCTAGGTAGTGAAAGACCGAATTTTGTTCGGTCAATTC
GGTTAGTCTCCTCGGACCGAAAAGACCGAAAGACCAAAGACCGAGACAGAAATTTTCGGTTAGACCGAATGCCCACCCCT
ACTTCTCCGTTTCAGGTTATAAAACTTTCTAGCATTGCTCACATTCATATAAATGTTAATGAATCTAGACACACATATAT
GTCTAGATTAGGGATGAAAACGGAGCGGATAGTTTCCATCTGCTCCGGCAAAAAACGAATACAGATAACTTTCGGATCGG
ATAATTCGGATACGGATACGAATACGGATATTTTCTTCCGGATACGAATACGAATATGGTATCGGAGTTTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis