Browse Element(s) Details


OsAffx.31276.1.S1_at

Description tigr:9639.m02989
TID=OsAffx.31276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3287010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32830Os.37083.2.S1_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32830Os.47130.4.A1_x_at1/1111+18892871..18893197retrotransposon protein, putative, unclassified
LOC_Os11g32840OsAffx.19132.1.S1_at11/1111+18901885..18902214hypothetical protein
LOC_Os11g32850OsAffx.29313.1.S1_at1/1111+18903950..18908542SWIM zinc finger family protein
LOC_Os11g32859Os.11375.1.S1_at4/1111+18910937..18911635hypothetical protein
LOC_Os11g32870OsAffx.31276.1.S1_at10/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.21416.1.S1_at3/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.55225.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.23167.2.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870OsAffx.25582.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57029.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32870Os.57362.1.S1_at1/1111+18914947..18918673hypothetical protein
LOC_Os11g32880Os.17502.1.S1_at11/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32880Os.23761.1.S1_at1/1111+18919975..18928159CarD-like transcriptional regulator family protein, expressed
LOC_Os11g32890Os.9988.1.S1_at11/1111+18928832..18929652expressed protein
LOC_Os11g32900Os.22481.1.S1_at11/1111+18931950..18938365retinoblastoma-related protein 1, putative, expressed
LOC_Os11g32910Os.24138.1.A1_at11/1111+18938572..18941264expressed protein
LOC_Os11g32920OsAffx.31277.1.S1_at11/1111+18942762..18943007hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31276.1.S1_at--328--6315Chr11:18914983..18915007 (25 bp)
GATGAAATGGGTTCTCCTCGGCGAG
LOC_Os11g32870
OsAffx.31276.1.S1_at--600--4611NONE
GCGAGGCAAGGCTAATGGTAGATAT
NONE
OsAffx.31276.1.S1_at--593--2671Chr11:18917040..18917063 (24 bp)
AAGCCCAATCCAACTATCGACGCAG
LOC_Os11g32870
OsAffx.31276.1.S1_at--436--2531Chr11:18917050..18917074 (25 bp)
AACTATCGACGCAGGCCAATATCAA
LOC_Os11g32870
OsAffx.31276.1.S1_at--908--511Chr11:18917054..18917078 (25 bp)
ATCGACGCAGGCCAATATCAACAAG
LOC_Os11g32870
OsAffx.31276.1.S1_at--132--4131Chr11:18917059..18917083 (25 bp)
CGCAGGCCAATATCAACAAGGTCCT
LOC_Os11g32870
OsAffx.31276.1.S1_at--492--51Chr11:18917378..18917402 (25 bp)
ATTGAGTGCGGCAAATTTGGTTCTC
LOC_Os11g32870
OsAffx.31276.1.S1_at--310--1131Chr11:18917382..18917406 (25 bp)
AGTGCGGCAAATTTGGTTCTCTATG
LOC_Os11g32870
OsAffx.31276.1.S1_at--1045--7051Chr11:18917425..18917917 (25 bp)
GTAAGCTAACAGTACAACCATATAA
LOC_Os11g32870
OsAffx.31276.1.S1_at--201--7671Chr11:18917921..18918180 (25 bp)
GGGATCTGTGGTCGGCCTGAGGATG
LOC_Os11g32870
OsAffx.31276.1.S1_at--845--5551Chr11:18918214..18918496 (25 bp)
GAAACCATGCTGCATGTAACACAGG
LOC_Os11g32870
Target Sequence 
GATGAAATGGGTTCTCCTCGGCGAGGCAAGGCTAATGGTAGATATTGTGCTAAATTTATTCCAAATCAAAATTATCCCTT
CCCCATCAGGATTGTCATGCTATCTGCTCTCTCCAAGCCCAATCCAACTATCGACGCAGGCCAATATCAACAAGGTCCTT
ACATGCAATACTCCCTTATTGATTCCTTCCTCGCTTCTGAACAAAAAGGACTCAGAGGTGATACATTGAGTGCGGCAAAT
TTGGTTCTCTATGTGTCTATTCATTTTCTAAGTAAGCTAACAGTACAACCATATAAAGGGGGATCTGTGGTCGGCCTGAG
GATGGAGGATAATATGATGTACCCAATCAAGGACCAAGAAACCATGCTGCATGTAACACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis