Browse Element(s) Details


Os.23167.2.S1_at

Description gb:CB654146
DB_XREF= gi:29657871
DB_XREF=OSJNEc05N17.f
CLONE=OSJNEc05N17
TID=Os.23167.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23167 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g561492/11
LOC_Os11g328701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56130OsAffx.22670.1.S1_x_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_s_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23167.2.S1_at--1004--6091Chr05:10700810..10700834 (25 bp)
GAGTCATGAAAACCTTCTCTTATGT
NONE
Os.23167.2.S1_at--402--9232Chr11:15012465..15012485 (21 bp)
TCCAGTTATGTATCTCATCTCTCAA
NONE
Os.23167.2.S1_at--916--2491Chr05:10700721..10700745 (25 bp)
AACAGTGTGGCCATGAAGTGTGTAA
NONE
Os.23167.2.S1_at--72--2251Chr05:10700698..10700722 (25 bp)
AAATTGATACAATCTTTGCAGCTGA
NONE
Os.23167.2.S1_at--848--10276Chr11:18915937..18915956 (20 bp)
TTTGCAGCTGATGAATTATCCTTTC
LOC_Os11g32870
Os.23167.2.S1_at--90--6771Chr05:10700637..10700661 (25 bp)
GTTAAGCTGAATTGCACTACCTGAA
NONE
Os.23167.2.S1_at--979--5071Chr05:10700624..10700648 (25 bp)
GCACTACCTGAATTTTATTTCCTTG
NONE
Os.23167.2.S1_at--108--212Chr03:31943000..31943019 (20 bp)
ATTTCCTTGGACAACCATGTTTCTG
LOC_Os03g56149
Os.23167.2.S1_at--185--3051Chr05:10700574..10700598 (25 bp)
CAAGGGCGGACCATGTTTTTGAAAT
NONE
Os.23167.2.S1_at--1069--5331Chr05:10700507..10700531 (25 bp)
GAAGATTTTCCAGATGGTTTCTTAT
NONE
Os.23167.2.S1_at--869--6831Chr05:10700491..10700515 (25 bp)
GTTTCTTATGAGTTTGGCTGCTTGT
NONE
Target Sequence 
GAGTCATGAAAACCTTCTCTTATGTCAATTTCATCCAGTTATGTATCTCATCTCTCAAACGATGAACAGTGTATAATCTC
ACGAGGAAGAACAGTGTGGCCATGAAGTGTGTAAATTGATACAATCTTTGCAGCTGATGAATTATCCTTTCATCATGGCC
ATTATAAATGGCAGTTAAGCTGAATTGCACTACCTGAATTTTATTTCCTTGGACAACCATGTTTCTGATTTTTTTTCAAG
GGCGGACCATGTTTTTGAAATTTACCATTTGGAAAAAAATTTCTGACATTGCTTACTGTATACGAAGATTTTCCAGATGG
TTTCTTATGAGTTTGGCTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis