Browse Element(s) Details


Os.24927.1.S1_at

Description gb:AK120949.1
DB_XREF= gi:37990572
TID=Os.24927.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like kinase (OSJNBb0094O03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038D05, full insert sequence.
FL= gb:AK120949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5616011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24927.1.S1_at--236--4451Chr03:31949021..31949045 (25 bp)
GCCTTTCTCCTCGAAGTTACATGTG
LOC_Os03g56160
Os.24927.1.S1_at--232--6331Chr03:31949144..31949168 (25 bp)
GATGCAAGGCTCCATGGCAACTACA
LOC_Os03g56160
Os.24927.1.S1_at--777--7911Chr03:31949202..31949226 (25 bp)
GGTTGTTGTGTTCACATCCATTGCC
LOC_Os03g56160
Os.24927.1.S1_at--278--71Chr03:31949221..31949245 (25 bp)
ATTGCCCGGTGCAAGGCCTAGCATG
LOC_Os03g56160
Os.24927.1.S1_at--956--4591Chr03:31949245..31949269 (25 bp)
GCGACAGGTTGTGCAGTATCTTGAA
LOC_Os03g56160
Os.24927.1.S1_at--917--3831Chr03:31949286..31949310 (25 bp)
CTGAGCTAACGCCAACACATCTAAG
LOC_Os03g56160
Os.24927.1.S1_at--541--4891Chr03:31949310..31949334 (25 bp)
GCTTTAGCATGCTAGCTCTTATGCA
LOC_Os03g56160
Os.24927.1.S1_at--639--5291Chr03:31949339..31949363 (25 bp)
GAAGGCTTTGACTCTTTTGTCATGT
LOC_Os03g56160
Os.24927.1.S1_at--753--10251Chr03:31949354..31949378 (25 bp)
TTTGTCATGTCAACATCGCTTCCAT
LOC_Os03g56160
Os.24927.1.S1_at--574--5991Chr03:31949381..31949405 (25 bp)
GAGACGATGATGACCATTGGCACGA
LOC_Os03g56160
Os.24927.1.S1_at--373--31Chr03:31949396..31949420 (25 bp)
ATTGGCACGATGAGTGGCCTCTCTG
LOC_Os03g56160
Target Sequence 
GCCTTTCTCCTCGAAGTTACATGTGGACGAAGACCTGTTGAGCAAGCCATGCAAGACAACCAANTCATGTTGGTCGATTG
GGTGCTTGAGCATTGGCAGAAAGGATCACTTACAAAGGTAATTGATGCAAGGCTCCATGGCAACTACAACATTGATGAGG
CAATCCTAGTGTTGAAGTTAGGGTTGTTGTGTTCACATCCATTGCCCGGTGCAAGGCCTAGCATGCGACAGGTTGTGCAG
TATCTTGAAGGTGACATGCCCTTCCCTGAGCTAACGCCAACACATCTAAGCTTTAGCATGCTAGCTCTTATGCAAAATGA
AGGCTTTGACTCTTTTGTCATGTCAACATCGCTTCCATCAGAGACGATGATGACCATTGGCACGATGAGTGGCCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis