Browse Element(s) Details


Os.12802.1.S1_at

Description gb:AK121608.1
DB_XREF= gi:37991231
TID=Os.12802.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome c oxidase subunit VIa precursor (OSJNBb0094O03.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042K10, full insert sequence.
FL= gb:AK059576.1 gb:AK121608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5619011/11Cytochrome c oxidase subunit VIa family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56250Os.21066.1.S1_at10/113+31982905..31987314wound and phytochrome signaling involved receptor like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12802.1.S1_at--1095--5771Chr03:31956751..31956887 (25 bp)
GACGACGCCCATGAGACGGCCAAGT
LOC_Os03g56190
Os.12802.1.S1_at--556--5351Chr03:31956892..31956916 (25 bp)
GAAGATCACCTACGCCGGGATCGTC
LOC_Os03g56190
Os.12802.1.S1_at--1058--3671Chr03:31957070..31957094 (25 bp)
CTATCTGCACATCCGTAACAAGGAG
LOC_Os03g56190
Os.12802.1.S1_at--1161--8091Chr03:31958164..31958188 (25 bp)
GGACCCGATGGCCTATTTGAGAACA
LOC_Os03g56190
Os.12802.1.S1_at--327--5091Chr03:31958190..31958214 (25 bp)
GCACCATTAAGTACTGAACAGCGCA
LOC_Os03g56190
Os.12802.1.S1_at--385--1651Chr03:31958209..31958233 (25 bp)
AGCGCACCATCAGAAGCCCAGTGAA
LOC_Os03g56190
Os.12802.1.S1_at--973--7891Chr03:31958253..31958277 (25 bp)
GGTTGTTCCAGTGATTCTTGTTTTC
LOC_Os03g56190
Os.12802.1.S1_at--311--3451Chr03:31958277..31958301 (25 bp)
CAGTGAAACCTATTTTTCTTGCAAC
LOC_Os03g56190
Os.12802.1.S1_at--157--8791Chr03:31958355..31958379 (25 bp)
TGTTAGTTGTTACCTGTTTTCTTCA
LOC_Os03g56190
Os.12802.1.S1_at--184--1431Chr03:31958415..31958439 (25 bp)
AGAAAATGCTGTCATCATCACAACA
LOC_Os03g56190
Os.12802.1.S1_at--1016--10791Chr03:31958444..31958468 (25 bp)
TTGTTATTATAATCTTCCTACGCCA
LOC_Os03g56190
Target Sequence 
GACGACGCCCATGAGACGGCCAAGTGGGAGAAGATCACCTACGCCGGGATCGTCACCTGCACCCTGCTGGCGGCGTACAA
CCTCTCCAAGGGCCACCCCCACTTCGACGAGCCGCCGGCGTACCCCTATCTGCACATCCGTAACAAGGAGTTCCCATGGG
GACCCGATGGCCTATTTGAGAACAAGCACCATTAAGTACTGAACAGCGCACCATCAGAAGCCCAGTGAATGCTTAAGAAA
AATTCTCTGGTTGTTCCAGTGATTCTTGTTTTCAGTGAAACCTATTTTTCTTGCAACAAAGAAATAAGAATGACAAAACT
CTTGTGTTGATAATCAGGATTTAACTGTGTTGTTAGTTGTTACCTGTTTTCTTCATTCACAGCAGTGATCATATGCATGT
GTTCTGTTTCAGAAAATGCTGTCATCATCACAACAAGCTTTGTTATTATAATCTTCCTACGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis