Browse Element(s) Details


OsAffx.25732.1.S1_at

Description tigr:9631.m05491
TID=OsAffx.25732.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g561707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56149Os.23167.2.S1_at2/113+31941717..31943382NA
LOC_Os03g56160Os.24927.1.S1_at11/113+31947398..31949431lectin receptor kinase 7, putative, expressed
LOC_Os03g56170OsAffx.25732.1.S1_at7/113+31951030..31951416hypothetical protein
LOC_Os03g56180OsAffx.13504.1.S1_at11/113+31952157..31954191Protein kinase domain containing protein, expressed
LOC_Os03g56190Os.12802.1.S1_at11/113+31956589..31958474Cytochrome c oxidase subunit VIa family protein, expressed
LOC_Os03g56200Os.29068.1.S1_at11/113+31958515..31960126expressed protein
LOC_Os03g56220Os.26469.1.S1_at11/113+31967085..31968819expressed protein
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25732.1.S1_at--1080--711Chr03:31951359..31951383 (25 bp)
ATGATTACTGAGTGGGCGCCTACAT
LOC_Os03g56170
OsAffx.25732.1.S1_at--729--4851Chr03:31951308..31951332 (25 bp)
GCTACTGAGTGGGTGCATATGCCAA
LOC_Os03g56170
OsAffx.25732.1.S1_at--609--791Chr03:31951259..31951283 (25 bp)
ATGTGGTAGCTGACCTAAATACAAC
LOC_Os03g56170
OsAffx.25732.1.S1_at--190--3271Chr03:31951238..31951262 (25 bp)
CAACAAGCGCTTCCAGAGCAGAATG
LOC_Os03g56170
OsAffx.25732.1.S1_at--566--7951Chr03:31951130..31951154 (25 bp)
GGATAGCTCACGCTTTAGCTCAAAT
LOC_Os03g56170
OsAffx.25732.1.S1_at--468--1571Chr03:31951114..31951138 (25 bp)
AGCTCAAATGGCGTTAAGGTCAGGA
LOC_Os03g56170
OsAffx.25732.1.S1_at--285--7531Chr03:31951078..31951102 (25 bp)
GTGGAAGTTAAGTGCTCCTGCAGAA
LOC_Os03g56170
OsAffx.25732.1.S1_at--601--10711Chr03:31950940..31950964 (25 bp)
TTGAAAAATTGCATCGGGACCCACA
NONE
OsAffx.25732.1.S1_at--111--10311Chr03:31950849..31950873 (25 bp)
TTTCCCTGCCTTTGCTAGGATGACG
NONE
OsAffx.25732.1.S1_at--1140--671Chr03:31950830..31950854 (25 bp)
ATGACGGCTGCTACAGGCGCCGAGA
NONE
OsAffx.25732.1.S1_at--1145--2991Chr03:31950756..31950780 (25 bp)
AATGAGCAAGCATGACCAGGTCACA
NONE
Target Sequence 
ATGATTACTGAGTGGGCGCCTACATGGGCTTGCTTGGAAGGGGTTCGGATAGCTACTGAGTGGGTGCATATGCCAATGAT
TATAGAATTAGACAATGGTAATGTGGTAGCTGACCTAAATACAACAAGCGCTTCCAGAGCAGAATGGGGTGGAATAATTT
CAGAAGTAAGAGCAGCAATGCAATGTTTGGTGCAGGTGCAGGTGCACAACATAAAGAGAGATTCAAATAGGATAGCTCAC
GCTTTAGCTCAAATGGCGTTAAGGTCAGGAATTGATGCGGAGTGGAAGTTAAGTGCTCCTGCAGAAATCCTTGATCTTCT
GAATCAAGAATTTGAAAAATTGCATCGGGACCCACATCATCATCCCCTTTCTTTCGCCTCTTCTATCCCTTCCTCCTCTC
TATCTCTCTCTCTCTCTCTCCCTTTCCCTGCCTTTGCTAGGATGACGGCTGCTACAGGCGCCGAGAGGGGAGTGGATGCC
GGCGACCCGCACATCCAGGGGCTAAGGAACTGGGAAATGAGCAAGCATGACCAGGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis