Browse Element(s) Details


Os.57551.1.S1_s_at

Description gb:AB028884.1
DB_XREF= gi:5103726
GEN=OSH43
TID=Os.57551.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57551 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
PROD=knotted1-type homeobox protein OSH43
FL= gb:AB028884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5611011/11KNOX1 domain containing protein, expressed
LOC_Os03g561402/11KNOX1 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g56100OsAffx.13502.1.S1_at11/113+31898552..31901922hypothetical protein
LOC_Os03g56100Os.55223.1.S1_at4/113+31898552..31901922hypothetical protein
LOC_Os03g56110Os.31463.1.S1_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.57551.1.S1_s_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.8575.1.S1_at1/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56120NANA3+31912989..31913459hypothetical protein
LOC_Os03g56130OsAffx.22670.1.S1_x_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_s_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56130OsAffx.22670.1.S1_at11/113+31915111..31919794Glycosyl hydrolases family 17 protein
LOC_Os03g56140Os.57551.1.S1_s_at2/113+31925643..31930528KNOX1 domain containing protein
LOC_Os03g56140Os.8575.1.S1_at1/113+31925643..31930528KNOX1 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57551.1.S1_s_at--565--4631Chr03:31908480..31908504 (25 bp)
GCGATCTCCGGCAGGTGTTCTCCAA
LOC_Os03g56110
Os.57551.1.S1_s_at--256--8411Chr03:31908579..31908705 (25 bp)
GGCCCTATCCCTCCGAGATGGAGAA
LOC_Os03g56110
Os.57551.1.S1_s_at--961--1452Chr03:31930272..31930296 (25 bp)
AGAAGATGACGCTGGCGCAGACGAC
LOC_Os03g56140
Os.57551.1.S1_s_at--963--10651Chr03:31908812..31908836 (25 bp)
TTCCCGACGATGGAAGCTGCCGGAG
LOC_Os03g56110
Os.57551.1.S1_s_at--265--4032Chr03:31930491..31930515 (25 bp)
CGTTCGTTGTGGACGGCATGTACCG
LOC_Os03g56140
Os.57551.1.S1_s_at--1045--4892Chr03:31930506..31930530 (25 bp)
GCATGTACCGGCTCGGGTCTTGAAG
NONE
Os.57551.1.S1_s_at--393--2251Chr03:31908993..31909017 (25 bp)
AAATATTTGCTAGCAGCTTCCCATG
LOC_Os03g56110
Os.57551.1.S1_s_at--678--1552Chr03:31909007..31909031 (25 bp)
AGCTTCCCATGATCAGCCTGTGGGA
LOC_Os03g56110
Os.57551.1.S1_s_at--217--9012Chr03:31930593..31930617 (25 bp)
TGAATCTTCATCACGATCTTTCCTC
NONE
Os.57551.1.S1_s_at--1100--9812Chr03:31930652..31930676 (25 bp)
TAAAAGCTCAGATGTACCACGTACT
NONE
Os.57551.1.S1_s_at--111--1712Chr03:31909117..31909141 (25 bp)
ACCACGTACTACTGTCTGCTTCTTT
LOC_Os03g56110
Target Sequence 
GCGATCTCCGGCAGGTGTTCTCCAAGAGGACCAAGAAAGGGAAGCTTCCCAAGGAGGCCAGGCAGAAGCTTCTGCACTGG
TGGGAGCTGCACTACAAGTGGCCCTATCCCTCCGAGATGGAGAAGATGACGCTGGCGCAGACGACGGGGCTGGACCAGAA
GCAGATCAACAACTGGTTCATCAACCAGAGGAAGCGGCACTGGAAGCCGACGCCGGTGGCAGGCACGGCCTTCCCGACGA
TGGAAGCTGCCGGAGGCGGCTTCCGACACTCCGGCCACGGCGGCGGCCTTGCGGCGGCGGCGGCGCTGCCGCTGTACATG
GGCAGGCCGTTCGTTGTGGACGGCATGTACCGGCTCGGGTCTTGAAGCCTCTGGGGATCGCATGGTGTTTGCATGGTGTT
TTTTGCTTGGTAAATATTTGCTAGCAGCTTCCCATGATCAGCCTGTGGGATGGTGAAATGGAAGAACTGATGAATCTTCA
TCACGATCTTTCCTCTCATTTTTTTTTCTTTGGTGTGTGATAAAAGCTCAGATGTACCACGTACTACTGTCTGCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57551.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis