Browse Element(s) Details


Os.55223.1.S1_at

Description gb:AK107690.1
DB_XREF= gi:32992899
TID=Os.55223.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B11, full insert sequence.
FL= gb:AK107690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3557411/11expressed protein
LOC_Os03g561004/11hypothetical protein
LOC_Os12g079101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35560Os.14895.1.S1_at11/116+20750065..20751958Reticuline oxidase precursor, putative, expressed
LOC_Os06g35570OsAffx.27952.1.S1_at11/116+20755221..20755825hypothetical protein
LOC_Os06g35570OsAffx.15200.2.S1_x_at1/116+20755221..20755825hypothetical protein
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein
LOC_Os06g35620NANA6+20782545..20783027hypothetical protein
LOC_Os06g35630OsAffx.5019.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630Os.9708.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630OsAffx.11451.4.S1_x_at1/116+20783372..20785144Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55223.1.S1_at--923--4191Chr06:20760254..20760278 (25 bp)
CCCGGTGTGCGGAAGGCCTGGAGCT
LOC_Os06g35574
Os.55223.1.S1_at--818--3971Chr06:20760161..20760185 (25 bp)
CGGTGCACGGAAGGCCGGAAGCTCC
LOC_Os06g35574
Os.55223.1.S1_at--74--1932Chr03:31899260..31899284 (25 bp)
ACGGCCGGGAGCTCACATGTGGAAA
LOC_Os03g56100
Os.55223.1.S1_at--800--6311Chr06:20759924..20759948 (25 bp)
GATGACATGTGGAGCCAACTAATTT
LOC_Os06g35574
Os.55223.1.S1_at--602--8091Chr06:20759914..20759938 (25 bp)
GGAGCCAACTAATTTTTGTTTTGTG
LOC_Os06g35574
Os.55223.1.S1_at--824--10232Chr12:6953405..6953429 (25 bp)
TTTGTGAATGACATGTCGGTCCCAC
NONE
Os.55223.1.S1_at--190--6814Chr12:6967946..6967970 (25 bp)
GTTTTTACTCTTGTGCCAGATAAGC
NONE
Os.55223.1.S1_at--832--5631Chr06:20759819..20759843 (25 bp)
GACACGCTGGACGAAAACCGGGTCA
LOC_Os06g35574
Os.55223.1.S1_at--63--5776Chr08:434128..434147 (20 bp)
GACGAAAACCGGGTCAACACTGCCA
NONE
Os.55223.1.S1_at--470--293Chr12:6968053..6968099 (25 bp)
ATAGTTGGAGTCGATATGCCCGGTT
NONE
Os.55223.1.S1_at--388--8554Chr12:6968081..6968103 (23 bp)
TGGAGTCGATATGCCCGGTTTTGTT
NONE
Target Sequence 
CCCGGTGTGCGGAAGGCCTGGAGCTCTTCCCCCGCGCGTGGACGGCCGGGAGCTCCTCCCCCAGCACGCTCCTTCCCCGG
CGAGCTCCTCCCCCGGTGCACGGAAGGCCGGAAGCTCCTCCCCCGCGCGCGGACGCCGGCGAGCTCCTCCCCCGTCGCGC
GGACGCCGGCGAGCTCCTCCCCCGTCGCGCGGGCGCCGGCTCCTCCCGCGGCGCGCGGACGGCCGGGAACTCCTACCCCA
CGCACGGACGCCGGCGAGCTCCTCCCCCGTCGCACGGACAGCAAGCTCTTCCCCCAGCATGCGGACGGCCGGGAGCTCAC
ATGTGGAAAAGATGACATGTGGAGCCAACTAATTTTTGTTTTGTGAATGACATGTCGGTCCCACAATTTTTTGTTTTTTG
TTTTTACTCTTGTGCCAGATAAGCGACACGTCGACGACACGCTGGACGAAAACCGGGTCAACACTGCCACGTGGTCGCCA
CGTCAGCCAAAACCGCCTCCAAAACCACCCAGGGGCATAGTTTGCACCGGTTTTGATAGTTGGAGTCGATATGCCCGGTT
TTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis