Browse Element(s) Details


Os.9708.1.S1_at

Description gb:AU086033
DB_XREF= gi:7332687
DB_XREF=AU086033
CLONE=S2381
TID=Os.9708.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9708 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3563011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein
LOC_Os06g35620NANA6+20782545..20783027hypothetical protein
LOC_Os06g35630OsAffx.5019.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630Os.9708.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630OsAffx.11451.4.S1_x_at1/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35639NANA6+20787240..20788926NA
LOC_Os06g35650Os.53599.1.S1_at11/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650OsAffx.11451.4.S1_x_at1/116+20807197..20809008Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9708.1.S1_at--656--211Chr06:20783528..20783552 (25 bp)
ATTTGGGCTTAATTTGACGCAAGGT
LOC_Os06g35630
Os.9708.1.S1_at--291--10491Chr06:20783520..20783544 (25 bp)
TTAATTTGACGCAAGGTTGGTTGGT
LOC_Os06g35630
Os.9708.1.S1_at--443--10851Chr06:20783504..20783528 (25 bp)
TTGGTTGGTTGCGTGTACCGCCTTT
LOC_Os06g35630
Os.9708.1.S1_at--1001--4651Chr06:20783494..20783518 (25 bp)
GCGTGTACCGCCTTTGTGTTCGGTT
LOC_Os06g35630
Os.9708.1.S1_at--393--4171Chr06:20783486..20783510 (25 bp)
CGCCTTTGTGTTCGGTTCTTGGTGA
LOC_Os06g35630
Os.9708.1.S1_at--561--6711Chr06:20783477..20783501 (25 bp)
GTTCGGTTCTTGGTGAACTCTTATA
LOC_Os06g35630
Os.9708.1.S1_at--191--5471Chr06:20783463..20783487 (25 bp)
GAACTCTTATATTATTACGTGGACA
LOC_Os06g35630
Os.9708.1.S1_at--303--151Chr06:20783450..20783474 (25 bp)
ATTACGTGGACATGTTCTGTTGACT
LOC_Os06g35630
Os.9708.1.S1_at--1069--8111Chr06:20783443..20783467 (25 bp)
GGACATGTTCTGTTGACTGTTGACA
LOC_Os06g35630
Os.9708.1.S1_at--68--5731Chr06:20783429..20783453 (25 bp)
GACTGTTGACAGTCTTTCAGAGTTT
LOC_Os06g35630
Os.9708.1.S1_at--438--8811Chr06:20783426..20783450 (25 bp)
TGTTGACAGTCTTTCAGAGTTTTTT
LOC_Os06g35630
Target Sequence 
ATTTGGGCTTAATTTGACGCAAGGTTGGTTGGTTGCGTGTACCGCCTTTGTGTTCGGTTCTTGGTGAACTCTTATATTAT
TACGTGGACATGTTCTGTTGACTGTTGACAGTCTTTCAGAGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis