Browse Element(s) Details


Os.12317.1.S1_at

Description gb:AK072611.1
DB_XREF= gi:32982634
TID=Os.12317.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence.
FL= gb:AK072611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3559011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35560Os.14895.1.S1_at11/116+20750065..20751958Reticuline oxidase precursor, putative, expressed
LOC_Os06g35570OsAffx.27952.1.S1_at11/116+20755221..20755825hypothetical protein
LOC_Os06g35570OsAffx.15200.2.S1_x_at1/116+20755221..20755825hypothetical protein
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein
LOC_Os06g35620NANA6+20782545..20783027hypothetical protein
LOC_Os06g35630OsAffx.5019.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630Os.9708.1.S1_at11/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35630OsAffx.11451.4.S1_x_at1/116+20783372..20785144Reticuline oxidase precursor, putative, expressed
LOC_Os06g35639NANA6+20787240..20788926NA

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12317.1.S1_at--1102--1891Chr06:20767198..20767222 (25 bp)
ACGTCTCCTGCTACCAGGTCGGCAA
LOC_Os06g35590
Os.12317.1.S1_at--180--1331Chr06:20767138..20767162 (25 bp)
AGAGGCTCGCCAGGACGAAGGCCAA
LOC_Os06g35590
Os.12317.1.S1_at--229--7511Chr06:20767112..20767136 (25 bp)
GTGGATCCCACCGACTTCTTCAGGA
LOC_Os06g35590
Os.12317.1.S1_at--283--91Chr06:20767076..20767100 (25 bp)
ATTCCTCCATTGCTCGCGTGATCGA
LOC_Os06g35590
Os.12317.1.S1_at--412--411Chr06:20767034..20767058 (25 bp)
ATCATCGACGGAAACGCACAATTTG
LOC_Os06g35590
Os.12317.1.S1_at--332--3111Chr06:20766968..20766992 (25 bp)
AATTAAGTACTTGGACGTGTCACAT
LOC_Os06g35590
Os.12317.1.S1_at--1089--5751Chr06:20766955..20766979 (25 bp)
GACGTGTCACATGTCCAACAAATAA
LOC_Os06g35590
Os.12317.1.S1_at--1160--5831Chr06:20766929..20766953 (25 bp)
GATCAACCAACTAACGTATAATCGT
LOC_Os06g35590
Os.12317.1.S1_at--104--6971Chr06:20766700..20766724 (25 bp)
GTAGCTAGTAGCGTTTTACATTTCA
LOC_Os06g35590
Os.12317.1.S1_at--992--2071Chr06:20766683..20766707 (25 bp)
ACATTTCAATGTTCGTGCCATCCAC
LOC_Os06g35590
Os.12317.1.S1_at--1136--8791Chr06:20766674..20766698 (25 bp)
TGTTCGTGCCATCCACTTAATTTAT
LOC_Os06g35590
Target Sequence 
ACGTCTCCTGCTACCAGGTCGGCAAGGTGTGGGGCGAGAAGTACTTCAAGGGCAACTTCGAGAGGCTCGCCAGGACGAAG
GCCAAGGTGGATCCCACCGACTTCTTCAGGAACGAGCAGAGCATTCCTCCATTGCTCGCGTGATCGATCGATCGACAGAA
ATTAATCATCGACGGAAACGCACAATTTGCATCGAGATTTAATTAGTGTGTGTGAGTGGTGAGTACGATTAATTAAGTAC
TTGGACGTGTCACATGTCCAACAAATAAAGATCAACCAACTAACGTATAATCGTAAGNAAGATTATTNGTTTTTTTTTCN
NTTTTTCATACACGTGTGCGCGTATNGAGNTTCTACTTCCTCCGTTTTATNAATGTNAAAACTTTCTAGCATTGCCCACG
TTCATTTATATGTTAATGAATCTAGATATATGTATGTGTTTAAATTCATTAACATCTATATGTATATGAGCAATGTTAGA
AATTCTTATATTATGAAACGGAGGGAGTAGCTAGTAGCGTTTTACATTTCAATGTTCGTGCCATCCACTTAATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis