Browse Element(s) Details


Os.14895.1.S1_at

Description gb:AK105176.1
DB_XREF= gi:32990385
TID=Os.14895.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence.
FL= gb:AK105176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3556011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35540Os.4772.1.S1_at11/116+20726251..20730771Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os06g35550OsAffx.19542.3.S1_x_at3/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35550OsAffx.9949.1.S1_at1/116+20735010..20743699retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g35560Os.14895.1.S1_at11/116+20750065..20751958Reticuline oxidase precursor, putative, expressed
LOC_Os06g35570OsAffx.27952.1.S1_at11/116+20755221..20755825hypothetical protein
LOC_Os06g35570OsAffx.15200.2.S1_x_at1/116+20755221..20755825hypothetical protein
LOC_Os06g35574Os.55223.1.S1_at11/116+20759709..20760605expressed protein
LOC_Os06g35580NANA6+20762726..20764144retrotransposon protein, putative, unclassified
LOC_Os06g35590Os.12317.1.S1_at11/116+20766659..20768687Reticuline oxidase precursor, putative, expressed
LOC_Os06g35600OsAffx.16354.1.S1_x_at1/116+20771755..20774043Transposable element protein, putative, Retrotrans_gag
LOC_Os06g35610NANA6+20775767..20776162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14895.1.S1_at--441--8031Chr06:20750396..20750420 (25 bp)
GGAGAGCGTACTTCAAGGCCAACTT
LOC_Os06g35560
Os.14895.1.S1_at--429--7731Chr06:20750344..20750368 (25 bp)
GGTGGATCCTGACAACTACTTCAAG
LOC_Os06g35560
Os.14895.1.S1_at--103--9271Chr06:20750338..20750362 (25 bp)
TCCTGACAACTACTTCAAGAACGAG
LOC_Os06g35560
Os.14895.1.S1_at--817--5931Chr06:20750316..20750340 (25 bp)
GAGCAGAGCATTCCACCACTTCCGA
LOC_Os06g35560
Os.14895.1.S1_at--902--1531Chr06:20750310..20750334 (25 bp)
AGCATTCCACCACTTCCGAGTTAGA
LOC_Os06g35560
Os.14895.1.S1_at--558--1591Chr06:20750271..20750295 (25 bp)
AGCTCCAGCCATTCTTCTGCTATAG
LOC_Os06g35560
Os.14895.1.S1_at--1139--3371Chr06:20750266..20750290 (25 bp)
CAGCCATTCTTCTGCTATAGTAATA
LOC_Os06g35560
Os.14895.1.S1_at--1045--5471Chr06:20750238..20750262 (25 bp)
GAACTAGTCAAATTCTCATGTGTTA
LOC_Os06g35560
Os.14895.1.S1_at--764--7091Chr06:20750232..20750256 (25 bp)
GTCAAATTCTCATGTGTTACTACAT
LOC_Os06g35560
Os.14895.1.S1_at--744--5151Chr06:20750142..20750166 (25 bp)
GCAACTATATTATACCTACGACATA
LOC_Os06g35560
Os.14895.1.S1_at--281--10191Chr06:20750114..20750138 (25 bp)
TATATTAGAAAAACTAGGCCACGGG
LOC_Os06g35560
Target Sequence 
GGAGAGCGTACTTCAAGGCCAACTTTGAGCGGCTCGCGGCGGTGAAGGCCAAGGTGGATCCTGACAACTACTTCAAGAAC
GAGCAGAGCATTCCACCACTTCCGAGTTAGANTGCTGTGGCCTCCAGCTCCAGCCATTCTTCTGCTATAGTAATAATAGA
ACTAGTCAAATTCTCATGTGTTACTACATNATAATAAAGTGAGTATTTGATAGTTTTTTTAAAAAAACTTTCAAATGTNN
CTATNATATATTAGNGCAACTATATTATACCTACGACATAAGTTATATTAGAAAAACTAGGCCACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis