Browse Element(s) Details


OsAffx.16354.1.S1_x_at

Description tigr:9635.m02067
TID=OsAffx.16354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2198011/11hypothetical protein
LOC_Os05g225001/11Transposable element protein, putative, Retrotrans_gag
LOC_Os02g029401/11succinate dehydrogenase subunit 3, putative, expressed
LOC_Os03g341021/11hypothetical protein
LOC_Os06g356001/11Transposable element protein, putative, Retrotrans_gag
LOC_Os11g264401/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g21950OsAffx.25367.1.S1_at1/117+12270751..12273155retrotransposon, putative, centromere-specific
LOC_Os07g21960OsAffx.16352.1.S1_at11/117+12281188..12283002expressed protein
LOC_Os07g21970NANA7+12288321..12289635hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_x_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21990NANA7+12296952..12299406retrotransposon protein, putative, unclassified
LOC_Os07g22000OsAffx.22711.4.A1_x_at2/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.25367.1.S1_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.22927.1.S1_x_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22024Os.54086.1.A1_at11/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g22024OsAffx.5395.1.S1_at10/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16354.1.S1_x_at--229--8151Chr07:12290996..12291020 (25 bp)
GGACACAACAGTTCAAACAAGCCCT
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--747--2491Chr07:12290990..12291014 (25 bp)
AACAGTTCAAACAAGCCCTGTGTGA
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--788--2211Chr07:12290980..12291004 (25 bp)
ACAAGCCCTGTGTGATCTTGGAGCA
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--399--2871Chr07:12290956..12290980 (25 bp)
AAGTGTCAGCGTCTTGCCAAAGGAT
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--32--5071Chr07:12290881..12290905 (25 bp)
GCAGCTGGCCGATTCATCTGTCCGT
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--93--1911Chr07:12290772..12290796 (25 bp)
ACGGGAAAGAAAACGCCACTCATGT
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--383--10571Chr07:12290741..12290765 (25 bp)
TTCTATTCCTTAGCACCGCAGAAGC
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--310--4391Chr07:12290605..12290629 (25 bp)
GCCAAACCCACAGAATATCGAAGTA
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--732--4111Chr07:12290587..12290611 (25 bp)
CGAAGTAGTCGAAGTGGAGCCTCCC
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--1150--8531Chr07:12290573..12290597 (25 bp)
TGGAGCCTCCCAAGATGGATGGCTT
LOC_Os07g21980
OsAffx.16354.1.S1_x_at--186--7757Chr11:14642051..14642077 (25 bp)
GGTGAAGTTCATGGAATTTCCTGGA
LOC_Os11g26440
Target Sequence 
GGACACAACAGTTCAAACAAGCCCTGTGTGATCTTGGAGCAAGTGTCAGCGTCTTGCCAAAGGATGTCTTTGACAAACTG
AACTTCACGGTGTTGGCACCAACACCGATGCGCCTGCAGCTGGCCGATTCATCTGTCCGTTACCCGGCAGGGATAGCGAA
GGATGTGCCGGTCAAGATACGGGATTTCTTCATCCCAGTTGATTTTGTGGTGCTGGACATGGACACGGGAAAGAAAACGC
CACTCATGTTGGGGCTTCTATTCCTTAGCACCGCAGAAGCCAACATTGACGTGGGAACGGGAAGTATCTGTTTCCATATC
AACGGGAAGGAAGAGAAGTTTGAGTTTCAGCCAAGGACTGAACAGTGCTCTATGGTCAGAATCAAGTACGGGCCAAACCC
ACAGAATATCGAAGTAGTCGAAGTGGAGCCTCCCAAGATGGATGGCTTGGTGAAGTTCATGGAATTTCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16354.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis