Browse Element(s) Details


OsAffx.5395.1.S1_at

Description tigr:9635.m02072
TID=OsAffx.5395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2202410/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g21970NANA7+12288321..12289635hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21980OsAffx.16354.1.S1_x_at11/117+12290491..12294159hypothetical protein
LOC_Os07g21990NANA7+12296952..12299406retrotransposon protein, putative, unclassified
LOC_Os07g22000OsAffx.22711.4.A1_x_at2/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.25367.1.S1_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22000OsAffx.22927.1.S1_x_at1/117+12300539..12309218retrotransposon, putative, centromere-specific
LOC_Os07g22024Os.54086.1.A1_at11/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g22024OsAffx.5395.1.S1_at10/117+12311829..12324069Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g22050NANA7+12324835..12327008retrotransposon, putative, centromere-specific
LOC_Os07g22060NANA7+12328970..12332868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070Os.32835.1.S1_x_at3/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070Os.32823.1.S1_x_at2/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22070OsAffx.512.1.S1_x_at1/117+12333989..12337057retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22080Os.27691.2.S1_x_at1/117+12340614..12341540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22090NANA7+12341959..12345902retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5395.1.S1_at--955--8091Chr07:12320128..12320152 (25 bp)
GGACCAGACGGATTCTTTATCGCTG
LOC_Os07g22024
OsAffx.5395.1.S1_at--593--4131Chr07:12320108..12320132 (25 bp)
CGCTGTCTGCCCACAGTGGTGAAAA
LOC_Os07g22024
OsAffx.5395.1.S1_at--140--7671Chr07:12320026..12320105 (25 bp)
GGGATCCATTTTTTGCCGAGTCCGA
LOC_Os07g22024
OsAffx.5395.1.S1_at--1111--10651Chr07:12319990..12320014 (25 bp)
TTCCTGTTCCTGTCACGAAGACGAC
LOC_Os07g22024
OsAffx.5395.1.S1_at--1000--5351Chr07:12319974..12319998 (25 bp)
GAAGACGACGCTGTCTCAGGCCGTC
LOC_Os07g22024
OsAffx.5395.1.S1_at--398--1231Chr07:12318810..12318834 (25 bp)
AGTTCCCGGATCCTATTTTCTAGAG
LOC_Os07g22024
OsAffx.5395.1.S1_at--350--1351Chr07:12318789..12318813 (25 bp)
AGAGTTTGCCGAGTTGGACACCCGA
LOC_Os07g22024
OsAffx.5395.1.S1_at--905--1811Chr07:12318771..12318795 (25 bp)
CACCCGAGTCCGAGTAAGATTCCGA
LOC_Os07g22024
OsAffx.5395.1.S1_at--573--2811Chr07:12318756..12318780 (25 bp)
AAGATTCCGACTCTCGAGTCTGAGT
LOC_Os07g22024
OsAffx.5395.1.S1_at--1017--6091NONE
GAGTCTGAGTTCTGGTCATTGCCTA
NONE
OsAffx.5395.1.S1_at--887--2971Chr07:12317337..12317361 (25 bp)
AATGGTGTTCATTGGGCGCAAGTTT
LOC_Os07g22024
Target Sequence 
GGACCAGACGGATTCTTTATCGCTGTCTGCCCACAGTGGTGAAAAAGGGGATCCATTTTTTGCCGAGTCCGAGCATCGCG
ATCTTCCTGTTCCTGTCACGAAGACGACGCTGTCTCAGGCCGTCGACGCCTTCGCTGCCGCTGGCCGCGGCGCCAACACG
AGTTCCCGGATCCTATTTTCTAGAGTTTGCCGAGTTGGACACCCGAGTCCGAGTAAGATTCCGACTCTCGAGTCTGAGTT
CTGGTCATTGCCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTG
CAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGGAATGGGCACATGCAGGAAGGCAGGGAAGGGAATATCT
GGAGGCTGGTGTATGGATGCAATAGAGCTGGAGTTTGGTGTCTGTGAAGTACAGTTATGGAACCAGTGGTGTTCATGCAA
AATTAATGGTGTTCATTGGGCGCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis