Browse Element(s) Details


Os.32835.1.S1_x_at

Description gb:AK102686.1
DB_XREF= gi:32987895
TID=Os.32835.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.32835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102N12, full insert sequence.
FL= gb:AK102686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2739011/11expressed protein
LOC_Os07g220703/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein
LOC_Os07g27400NANA7+15959552..15962122hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32835.1.S1_x_at--1111--9857Chr07:12336413..12336437 (25 bp)
TACACAGATATTACCTCTCATGCAT
LOC_Os07g22070
Os.32835.1.S1_x_at--29--2196Chr07:12336414..12336438 (25 bp)
ACACAGATATTACCTCTCATGCATT
LOC_Os07g22070
Os.32835.1.S1_x_at--557--9831Chr07:15936689..15936713 (25 bp)
TATAGTAAAACAGCAAAGTTGGATC
LOC_Os07g27390
Os.32835.1.S1_x_at--559--10052Chr09:1540785..1540804 (20 bp)
TAGTAAAACAGCAAAGTTGGATCAT
NONE
Os.32835.1.S1_x_at--604--1151Chr07:15936686..15936710 (25 bp)
AGTAAAACAGCAAAGTTGGATCATC
LOC_Os07g27390
Os.32835.1.S1_x_at--195--2411Chr07:15936682..15936706 (25 bp)
AAACAGCAAAGTTGGATCATCATAT
LOC_Os07g27390
Os.32835.1.S1_x_at--330--2151Chr07:15936680..15936704 (25 bp)
ACAGCAAAGTTGGATCATCATATAG
LOC_Os07g27390
Os.32835.1.S1_x_at--776--5131Chr07:15936677..15936701 (25 bp)
GCAAAGTTGGATCATCATATAGCTT
LOC_Os07g27390
Os.32835.1.S1_x_at--350--3291Chr07:15936676..15936700 (25 bp)
CAAAGTTGGATCATCATATAGCTTC
LOC_Os07g27390
Os.32835.1.S1_x_at--69--6631Chr07:15936672..15936696 (25 bp)
GTTGGATCATCATATAGCTTCTGCT
LOC_Os07g27390
Os.32835.1.S1_x_at--393--8577Chr10:8938320..8938340 (21 bp)
TGGATCATCATATAGCTTCTGCTGT
NONE
Target Sequence 
TACACAGATATTACCTCTCATGCATTNATTGTTGAATAATATAATAGCTTNCTGAGTACGTTGTACTCACCCNNNNTTNN
NNNNNTNNNNNNCAGAGTCTATTTGGAGTTNTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTCCCTTTAAACCTA
ATCTTCAAGTCTAGTATAATTAGATGGTTTAATTCTATAGTAAAACAGCAAAGTTGGATCATCATATAGCTTCTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32835.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis