Browse Element(s) Details


Os.32823.1.S1_x_at

Description gb:AK102743.1
DB_XREF= gi:32987952
TID=Os.32823.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0594D10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106H13, full insert sequence.
FL= gb:AK102743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g203202/11Zinc knuckle family protein
LOC_Os07g273902/11expressed protein
LOC_Os07g220702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g232402/11hypothetical protein
LOC_Os12g337502/11hypothetical protein
LOC_Os07g264101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g252101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20290NANA4+11322177..11324620hypothetical protein
LOC_Os04g20300NANA4+11331931..11333031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20310NANA4+11334064..11336166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20320Os.32823.1.S1_x_at2/114+11339837..11345945Zinc knuckle family protein
LOC_Os04g20320Os.48033.1.S1_at1/114+11339837..11345945Zinc knuckle family protein
LOC_Os04g20330Os.52956.1.S1_at11/114+11350754..11352588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20340NANA4+11357203..11359693retrotransposon protein, putative, unclassified
LOC_Os04g20350NANA4+11360810..11366248retrotransposon protein, putative, unclassified
LOC_Os04g20360Os.27435.1.S1_x_at5/114+11370808..11372988hypothetical protein
LOC_Os04g20360Os.46334.1.S1_x_at4/114+11370808..11372988hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32823.1.S1_x_at--269--32132Chr12:22993988..22994012 (25 bp)
CAAGGCTAATGTGTTTGGCACGTCA
NONE
Os.32823.1.S1_x_at--1119--86525Chr12:22993997..22994021 (25 bp)
TGTGTTTGGCACGTCATGGATTGCG
NONE
Os.32823.1.S1_x_at--127--6914Chr08:13311687..13311710 (24 bp)
GTATGAATATCCTCAAAACTATTCA
NONE
Os.32823.1.S1_x_at--1110--9857Chr07:12336413..12336437 (25 bp)
TACACAGATATTACCTCTCATGCAT
LOC_Os07g22070
Os.32823.1.S1_x_at--1104--6518Chr07:12336419..12336443 (25 bp)
GATATTACCTCTCATGCATTCATTG
LOC_Os07g22070
Os.32823.1.S1_x_at--1148--4913Chr09:2638396..2638416 (21 bp)
GCTTGCTTAGTACGTTGTACTTATC
NONE
Os.32823.1.S1_x_at--772--6991Chr07:25653385..25653409 (25 bp)
GTACGTTGTACTTATCCTTACTTCA
NONE
Os.32823.1.S1_x_at--366--8751Chr07:25653379..25653403 (25 bp)
TGTACTTATCCTTACTTCAACCCCT
NONE
Os.32823.1.S1_x_at--1119--9232Chr11:19179507..19179530 (24 bp)
TCCTTTAAAACTAGTCTTCAAGTCT
NONE
Os.32823.1.S1_x_at--1078--9811Chr07:25653240..25653264 (25 bp)
TAAAACGGCAGAATTGGGTCACAGT
NONE
Os.32823.1.S1_x_at--25--10851Chr07:25653227..25653251 (25 bp)
TTGGGTCACAGTATAGCTTCTGCTG
NONE
Target Sequence 
CAAGGCTAATGTGTTTGGCACGTCATGGATTGCGGGTAAAGCGTACATCTACTGCAGTATGAATATCCTCAAAACTATTC
AAATAGCCGTGCTCGCGGTTATCGGGCATTGGGACTCACTATGGCATCTTGGATAGAAACCTAATTTGAAATTTTATTAA
ATACTTCTGCATTTAAAACATTACAGGTTTTCTACTTCTATATTCTCTGCTTTCTGCAAGTAAATCTAGCTCTACACAGA
TATTACCTCTCATGCATTCATTGTTGAATAATATAATAGCTTGCTTAGTACGTTGTACTTATCCTTACTTCAACCCCTCT
TTTTCAGAGTCTATTTGGAGTTTTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTTCCTTTAAAACTAGTCTTCAA
GTCTAGTATAGTTAGACGGTTTAATTCTATAGTAAAACGGCAGAATTGGGTCACAGTATAGCTTCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32823.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis