Browse Element(s) Details


Os.52956.1.S1_at

Description gb:AK070110.1
DB_XREF= gi:32980134
TID=Os.52956.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045L03, full insert sequence.
FL= gb:AK099145.1 gb:AK070110.1 gb:AK059031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2033011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g204002/11Cytokinin-O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20300NANA4+11331931..11333031retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20310NANA4+11334064..11336166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20320Os.32823.1.S1_x_at2/114+11339837..11345945Zinc knuckle family protein
LOC_Os04g20320Os.48033.1.S1_at1/114+11339837..11345945Zinc knuckle family protein
LOC_Os04g20330Os.52956.1.S1_at11/114+11350754..11352588UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20340NANA4+11357203..11359693retrotransposon protein, putative, unclassified
LOC_Os04g20350NANA4+11360810..11366248retrotransposon protein, putative, unclassified
LOC_Os04g20360Os.27435.1.S1_x_at5/114+11370808..11372988hypothetical protein
LOC_Os04g20360Os.46334.1.S1_x_at4/114+11370808..11372988hypothetical protein
LOC_Os04g20370NANA4+11374236..11375429transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52956.1.S1_at--478--1432Chr04:11384476..11384500 (25 bp)
AGAACATTGGGCTTCTCATCCACGG
LOC_Os04g20400
Os.52956.1.S1_at--223--9572Chr04:11384319..11384343 (25 bp)
TCTTCAACGCCCAGATGCTGGAGGA
LOC_Os04g20400
Os.52956.1.S1_at--148--731Chr04:11350983..11351007 (25 bp)
ATGATTGGTCGAACTCTGGAGGACG
LOC_Os04g20330
Os.52956.1.S1_at--654--7732Chr04:11384122..11384146 (25 bp)
GGTGGTTCGTCCAAGACAGCATTGG
NONE
Os.52956.1.S1_at--566--10751Chr04:11350926..11350950 (25 bp)
TTGAAGCTGCATGGTCACATTATGC
LOC_Os04g20330
Os.52956.1.S1_at--651--10131Chr04:11350906..11350930 (25 bp)
TATGCTCATGAAATGCTGACGCCGA
LOC_Os04g20330
Os.52956.1.S1_at--65--175Chr01:38855127..38855149 (22 bp)
ATTTTCTGTTTTAGCAATTTGCCCA
NONE
Os.52956.1.S1_at--570--5191Chr04:11350860..11350884 (25 bp)
GCAATTTGCCCAACCTTGAAACGTG
LOC_Os04g20330
Os.52956.1.S1_at--270--5232Chr04:11383809..11383833 (25 bp)
GAAACGTGGTGCCTGAAATAACCTA
NONE
Os.52956.1.S1_at--760--8671Chr04:11350815..11350839 (25 bp)
TGTGTTCTTGAATAACGCACGCATT
LOC_Os04g20330
Os.52956.1.S1_at--166--1851Chr04:11350801..11350825 (25 bp)
ACGCACGCATTTGGGTTTTGTATTG
LOC_Os04g20330
Target Sequence 
AGAACATTGGGCTTCTCATCCACGGGTGGGCTCCGCAGGTGAGCATCCTCGCGCACGCGTCCACCGGCGCGTTCCTGAGC
CACTGCGGCTGGAACTCTGTGCTGGAGAGCATGGCGCACGGCGTGCCAATCATCGCGTGGCCGCTCACGGCGGACCAGTT
CTTCAACGCCCAGATGCTGGAGGAGTGGGGCGCGTGCGTGGAGGTGTCCCGCGGGAACTGGCCGGACTCCCCGGCGCTGG
AGCGTGAGAGGGTGGTCGAGGTCGTGGAGATGGTGATGGGGATTACGGCGAAGGCGGACAAGATACGACAGAGTGTGAAG
CAGATTCAGGGGATGATTGGTCGAACTCTGGAGGACGGTGGTTCGTCCAAGACAGCATTGGAGGAATTCTTGAAGCTGCA
TGGTCACATTATGCTCATGAAATGCTGACGCCGAGAGAAATAATTTTCTGTTTTAGCAATTTGCCCAACCTTGAAACGTG
GTGCCTGAAATAACCTATTATGTGTTCTTGAATAACGCACGCATTTGGGTTTTGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis