Browse Element(s) Details


OsAffx.16440.1.S1_at

Description tigr:9635.m02647
TID=OsAffx.16440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2738010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16440.1.S1_at--355--9471Chr07:15933194..15933218 (25 bp)
TCTGGTGATGGGATACCTGAGTCTT
LOC_Os07g27380
OsAffx.16440.1.S1_at--596--7391Chr07:15933198..15933222 (25 bp)
GTGATGGGATACCTGAGTCTTGCAA
LOC_Os07g27380
OsAffx.16440.1.S1_at--146--811Chr07:15933201..15933224 (24 bp)
ATGGGATACCTGAGTCTTGCAATGA
LOC_Os07g27380
OsAffx.16440.1.S1_at--733--7651NONE
GGGATACCTGAGTCTTGCAATGATA
NONE
OsAffx.16440.1.S1_at--1091--6471Chr07:15933205..15933538 (25 bp)
GATACCTGAGTCTTGCAATGATAAA
LOC_Os07g27380
OsAffx.16440.1.S1_at--11--1771Chr07:15933208..15933541 (25 bp)
ACCTGAGTCTTGCAATGATAAAATG
LOC_Os07g27380
OsAffx.16440.1.S1_at--480--6291Chr07:15933744..15933768 (25 bp)
GATGTTGGTGATTTCTATGATTTGT
LOC_Os07g27380
OsAffx.16440.1.S1_at--914--9531Chr07:15933757..15933781 (25 bp)
TCTATGATTTGTTTGAAGGACCTAT
LOC_Os07g27380
OsAffx.16440.1.S1_at--259--8971Chr07:15933770..15933794 (25 bp)
TGAAGGACCTATGGTTACGGTTTCT
LOC_Os07g27380
OsAffx.16440.1.S1_at--352--1931Chr07:15933786..15933810 (25 bp)
ACGGTTTCTAGGTCACTCTATGCTC
LOC_Os07g27380
OsAffx.16440.1.S1_at--34--3971Chr07:15933787..15933811 (25 bp)
CGGTTTCTAGGTCACTCTATGCTCA
LOC_Os07g27380
Target Sequence 
TCTGGTGATGGGATACCTGAGTCTTGCAATGATAAAATGGTTAATAATATCACTAAAGATGTTGGTGATTTCTATGATTT
GTTTGAAGGACCTATGGTTACGGTTTCTAGGTCACTCTATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis