Browse Element(s) Details


Os.16137.1.S1_s_at

Description gb:BI804529
DB_XREF= gi:16577233
DB_XREF=H139C10
CLONE=H139C10
TID=Os.16137.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16137 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2736011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16137.1.S1_s_at--1120--3371Chr07:15920631..15920655 (25 bp)
CAGCCCTAGCATCGATATACGGAGA
LOC_Os07g27360
Os.16137.1.S1_s_at--495--7431Chr07:15920674..15920698 (25 bp)
GTGTATCACATTTGCTGTCAAGCTG
LOC_Os07g27360
Os.16137.1.S1_s_at--721--6031Chr07:15920708..15920732 (25 bp)
GAGATGCCACTTCCTGAGGATGCCG
LOC_Os07g27360
Os.16137.1.S1_s_at--1157--991Chr07:15920776..15920800 (25 bp)
AGGATCTTCTGTCCCCTAGGAAAGC
LOC_Os07g27360
Os.16137.1.S1_s_at--722--8051Chr07:15920824..15920848 (25 bp)
GGAGATGCAACTCATATCTGCTTAA
LOC_Os07g27360
Os.16137.1.S1_s_at--880--8851Chr07:15920974..15920998 (25 bp)
TGATGCGGTACCTTGTGGGAGAACA
LOC_Os07g27360
Os.16137.1.S1_s_at--109--5971Chr07:15920992..15921016 (25 bp)
GAGAACAGATTGTCCCTTTGTGGTA
LOC_Os07g27360
Os.16137.1.S1_s_at--521--9131Chr07:15921037..15921061 (25 bp)
TGCGGTGAACTTTCCTGTTTTCTTA
LOC_Os07g27360
Os.16137.1.S1_s_at--150--9551Chr07:15921057..15921081 (25 bp)
TCTTAACGGTTCTGGGATTTGGACT
LOC_Os07g27360
Os.16137.1.S1_s_at--757--3711Chr07:15921080..15921104 (25 bp)
CTGAAAGGTCCGAATTTGGGCGAAT
LOC_Os07g27360
Os.16137.1.S1_s_at--76--3131Chr07:15921102..15921126 (25 bp)
AATTTCGCCCATTTCTGTGAGGTTC
LOC_Os07g27360
Target Sequence 
CAGCCCTAGCATCGATATACGGAGACCGTCCGAATGGGACATGTGTATCACATTTGCTGTCAAGCTGCTGATGGATGAGA
TGCCACTTCCTGAGGATGCCGCAGAAGTTGAAGAGTTCTTCAGACANAGCATCACAAATATTGCAGGATCTTCTGTCCCC
TAGGAAAGCTGCAAGAAATTACAGGATGAAGTGGAGATGCAACTCATATCTGCTTAATTAGCTGGGAGAAATTACTTCTA
AAACAAATTAGCTGGGAAAACTTAATAAGATGCACTTGGCATCTGTAGTAGATTTGAAAGGAGATAATTTGCCTGTGATG
TTTGTTAATTTGTGTGATGGATTGATGCGGTACCTTGTGGGAGAACAGATTGTCCCTTTGTGGTAAATGTCTTGAGTATG
TTTATTGCGGTGAACTTTCCTGTTTTCTTAACGGTTCTGGGATTTGGACTGAAAGGTCCGAATTTGGGCGAATTTCGCCC
ATTTCTGTGAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16137.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis