Browse Element(s) Details


Os.54017.1.S1_at

Description gb:AK101301.1
DB_XREF= gi:32986510
TID=Os.54017.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033K06, full insert sequence.
FL= gb:AK101301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2733011/11No apical meristem protein, expressed
LOC_Os07g273404/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27310OsAffx.5459.1.S1_at11/117+15874487..15879159CRAL/TRIO, N-terminus family protein, expressed
LOC_Os07g27320Os.7755.1.S1_at11/117+15882663..15888337glycosyl hydrolase family 10 protein, putative, expressed
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54017.1.S1_at--257--531Chr07:15898267..15898291 (25 bp)
ATCGACACGGTGTTCGGTGATCACG
LOC_Os07g27330
Os.54017.1.S1_at--665--1952Chr07:15906545..15906564 (20 bp)
ACTGGAGCAAGCTGACACCGGAGGT
LOC_Os07g27340
Os.54017.1.S1_at--157--5071Chr07:15898192..15898216 (25 bp)
GCAGCGGCGGTGAAACTCATGGACA
LOC_Os07g27330
Os.54017.1.S1_at--410--3932Chr07:15906981..15907005 (25 bp)
CGGCGTGGTGTGATTCGGATTTCCC
LOC_Os07g27340
Os.54017.1.S1_at--189--7932Chr07:15906997..15907021 (25 bp)
GGATTTCCCGGAGAGCATTGACGAG
LOC_Os07g27340
Os.54017.1.S1_at--149--1051Chr07:15898086..15898110 (25 bp)
AGGTGCTCAGCTATGTCGACTTCAG
LOC_Os07g27330
Os.54017.1.S1_at--358--9371Chr07:15898071..15898095 (25 bp)
TCGACTTCAGCACCGATGGCGCGAG
LOC_Os07g27330
Os.54017.1.S1_at--1062--4072Chr07:15907056..15907083 (25 bp)
CGAGCTGCGACTTCTCCATGGACGA
LOC_Os07g27340
Os.54017.1.S1_at--723--4812Chr07:15898025..15898049 (25 bp)
GCTCTTCGATCTTGCAGATTAGTTA
LOC_Os07g27330
Os.54017.1.S1_at--984--4971Chr07:15898000..15898024 (25 bp)
GCATCCTGGAGATAGCAAGCCACCA
LOC_Os07g27330
Os.54017.1.S1_at--1148--5492Chr07:15907135..15907159 (25 bp)
GAACACTGGCATTGACATTGTCTTT
NONE
Target Sequence 
ATCGACACGGTGTTCGGTGATCACGCCGAACCGATCGTCCTGCCACTGGAGCAAGCTGACACCGGAGGTGGTGCAGCAGC
GGCGGTGAAACTCATGGACAAGCAGAAGTACTCCTCCTCCTCCATGGATGGCGAGGAGGCGCCGGCGTGGTGTGATTCGG
ATTTCCCGGAGAGCATTGACGAGGTGCTCAGCTATGTCGACTTCAGCACCGATGGCGCGAGCTGCGACTTCTCCATGGAC
GAGCTCTTCGATCTTGCAGATTAGTTAGCATCCTGGAGATAGCAAGCCACCAAGAACACTGGCATTGACATTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis