Browse Element(s) Details


OsAffx.5459.1.S1_at

Description tigr:9635.m02638
TID=OsAffx.5459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CRALTRIO, N-terminus, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2731011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27280OsAffx.5458.1.S1_at11/117+15850535..15852833hypothetical protein
LOC_Os07g27290OsAffx.10222.1.S1_x_at2/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.45902.1.A1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.51841.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290OsAffx.22442.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27300Os.27553.1.S1_a_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27300Os.27553.2.S1_at11/117+15867303..15872372RNA-binding protein Luc7-like 1, putative, expressed
LOC_Os07g27310OsAffx.5459.1.S1_at11/117+15874487..15879159CRAL/TRIO, N-terminus family protein, expressed
LOC_Os07g27320Os.7755.1.S1_at11/117+15882663..15888337glycosyl hydrolase family 10 protein, putative, expressed
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5459.1.S1_at--748--4711Chr07:15876239..15876263 (25 bp)
GCTGGATTTAGAGCACTGTGGAAAG
LOC_Os07g27310
OsAffx.5459.1.S1_at--221--2691Chr07:15876208..15876232 (25 bp)
AAGCATGCATGGAGGCAAGAACTTT
LOC_Os07g27310
OsAffx.5459.1.S1_at--1067--3551Chr07:15876089..15876206 (25 bp)
GCAAAGATTCAGGTTTTAGGGACCA
LOC_Os07g27310
OsAffx.5459.1.S1_at--285--10071Chr07:15876073..15876097 (25 bp)
TAGGGACCAATTATCTTAGTACAAT
LOC_Os07g27310
OsAffx.5459.1.S1_at--721--3031Chr07:15876052..15876075 (24 bp)
AATACTAGAAGCAGTTGACCCAAGT
LOC_Os07g27310
OsAffx.5459.1.S1_at--199--5631Chr07:15875967..15876059 (25 bp)
GACCCAAGTAATTTACCAGACTTCT
LOC_Os07g27310
OsAffx.5459.1.S1_at--297--2111Chr07:15875934..15875958 (25 bp)
ACATGTACTTGTTCTGCAACTGGAG
LOC_Os07g27310
OsAffx.5459.1.S1_at--801--8791Chr07:15875907..15875931 (25 bp)
TGCTTGCTCCAAGATAAAGGACCTT
LOC_Os07g27310
OsAffx.5459.1.S1_at--325--9831Chr07:15875893..15875917 (25 bp)
TAAAGGACCTTGGACTGACCAGGAA
LOC_Os07g27310
OsAffx.5459.1.S1_at--429--5731Chr07:15875881..15875905 (25 bp)
GACTGACCAGGAAATTTCTCAAGCT
LOC_Os07g27310
OsAffx.5459.1.S1_at--610--2171Chr07:15875874..15875894 (21 bp)
AAATTTCTCAAGCTTCTAAGGGAGT
LOC_Os07g27310
Target Sequence 
GCTGGATTTAGAGCACTGTGGAAAGTATTAAAAGCATGCATGGAGGCAAGAACTTTAGCAAAGATTCAGGTTTTAGGGAC
CAATTATCTTAGTACAATACTAGAAGCAGTTGACCCAAGTAATTTACCAGACTTCTTAGGGGGAACATGTACTTGTTCTG
CAACTGGAGGATGCTTGCTCCAAGATAAAGGACCTTGGACTGACCAGGAAATTTCTCAAGCTTCTAAGGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis