Browse Element(s) Details


OsAffx.22442.1.S1_x_at

Description gb:NM_186631.1
DB_XREF= gi:34900347
GEN=OJ1118_B03.4
TID=OsAffx.22442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1118_B03.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g369003/11hypothetical protein
LOC_Os12g159202/11laccase family protein, putative
LOC_Os05g091302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g592202/11retrotransposon protein, putative, unclassified
LOC_Os03g191041/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g244001/11hypothetical protein
LOC_Os03g356301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g116901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g272901/11hypothetical protein
LOC_Os02g420301/11hypothetical protein
LOC_Os03g558601/11retrotransposon protein, putative, unclassified
LOC_Os04g288001/11hypothetical protein
LOC_Os12g274101/11retrotransposon protein, putative, unclassified
LOC_Os02g402501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g037101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g305501/11hypothetical protein
LOC_Os08g406501/11Protein kinase domain containing protein
LOC_Os05g314501/11hypothetical protein
LOC_Os11g468101/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36870Os.12434.1.S1_at11/111+20861935..20865792phox domain-containing protein, putative, expressed
LOC_Os01g36880OsAffx.2170.1.S1_s_at10/111+20866438..20867287hypothetical protein
LOC_Os01g36890Os.14280.1.S1_a_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.3.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.1.S1_x_at11/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.50777.1.S1_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890Os.14280.2.S1_x_at4/111+20867676..20873945Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22442.1.S1_x_at--1093--108112Chr12:16134367..16134386 (20 bp)
TTGGTGGAGTCGGATCAATTAAAGA
LOC_Os12g27410
OsAffx.22442.1.S1_x_at--776--4351Chr07:6825477..6825501 (25 bp)
CCAGAAGAATCCGAGTTCAATGAGG
NONE
OsAffx.22442.1.S1_x_at--1034--3411Chr07:6825478..6825502 (25 bp)
CAGAAGAATCCGAGTTCAATGAGGA
NONE
OsAffx.22442.1.S1_x_at--176--6753Chr07:6825491..6825623 (25 bp)
GTTCAATGAGGATGCGGAAAGTTTC
NONE
OsAffx.22442.1.S1_x_at--820--2992Chr07:6825495..6825627 (25 bp)
AATGAGGATGCGGAAAGTTTCTTTC
NONE
OsAffx.22442.1.S1_x_at--511--692Chr07:6825496..6825628 (25 bp)
ATGAGGATGCGGAAAGTTTCTTTCT
NONE
OsAffx.22442.1.S1_x_at--1098--797157Chr12:7049259..7049392 (25 bp)
GGATGCGGAAAGTTTCTTTCTTGTC
NONE
OsAffx.22442.1.S1_x_at--838--62950Chr12:20201046..20201177 (24 bp)
GATGCGGAAAGTTTCTTTCTTGTCT
NONE
OsAffx.22442.1.S1_x_at--522--9137Chr11:4503621..4503750 (25 bp)
TGCGGAAAGTTTCTTTCTTGTCTTA
NONE
OsAffx.22442.1.S1_x_at--1007--71134Chr12:9068423..9068498 (25 bp)
GTCTTACAAGGACTAGTATCTCCCT
LOC_Os12g15920
OsAffx.22442.1.S1_x_at--438--104939Chr12:9068479..9068501 (23 bp)
TTACAAGGACTAGTATCTCCCTATG
LOC_Os12g15920
Target Sequence 
TTGGTGGAGTCGGATCAATTAAAGAAAATTTATCCAGAAGAATCCGAGTTCAATGAGGATGCGGAAAGTTTCTTTCTTGT
CTTACAAGGACTAGTATCTCCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22442.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis