Browse Element(s) Details


OsAffx.1331.1.S1_at

Description gb:NM_187965.1
DB_XREF= gi:34903013
TID=OsAffx.1331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g100301/11transposon protein, putative, unclassified
LOC_Os01g369001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09990OsAffx.435.1.S1_at3/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09990OsAffx.16946.1.S1_at1/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10000OsAffx.31671.1.S1_at11/1112+5294432..5298002Transposable element protein, putative, Transposase_28
LOC_Os12g10010OsAffx.31672.1.S1_at11/1112+5300720..5302470hypothetical protein
LOC_Os12g10020OsAffx.31673.1.S1_at11/1112+5308741..5309115hypothetical protein
LOC_Os12g10030OsAffx.22896.1.S1_x_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030OsAffx.1331.1.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030Os.26833.2.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10040Os.45173.1.S1_x_at3/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20691.1.A1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040Os.45173.3.S1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20877.1.S1_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10050NANA12+5321142..5324477retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10060OsAffx.8201.1.S1_x_at2/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.8201.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10060OsAffx.16111.1.S1_at1/1112+5327482..5329764retrotransposon protein, putative, unclassified
LOC_Os12g10070OsAffx.7546.1.S1_at11/1112+5330506..5333653hypothetical protein
LOC_Os12g10080NANA12+5335762..5336349hypothetical protein
LOC_Os12g10090OsAffx.19542.3.S1_x_at7/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.21754.1.S1_x_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.9949.1.S1_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1331.1.S1_at--311--7171Chr01:8835883..8835907 (25 bp)
GTCTCCGAGGAGCTCATCGCTAAAG
NONE
OsAffx.1331.1.S1_at--851--2791Chr01:8835834..8835858 (25 bp)
AAGATGGTTTCTTGTTAACAGTGAA
NONE
OsAffx.1331.1.S1_at--729--2252Chr10:20234353..20234412 (25 bp)
AAATTTGCCTACTTTTTGACTGCCA
NONE
OsAffx.1331.1.S1_at--650--61511Chr11:21301387..21301902 (25 bp)
GAGGTTTCTGGACATTGCATCGGCT
NONE
OsAffx.1331.1.S1_at--132--10129Chr11:508248..508409 (25 bp)
AGGATTACATCCGATTGGTTTCTAC
NONE
OsAffx.1331.1.S1_at--768--6671Chr01:8834758..8834782 (25 bp)
GTTGCTTTCTTGCATTTATCATCAG
NONE
OsAffx.1331.1.S1_at--667--4959Chr08:19386006..19386026 (21 bp)
GCATTTATCATCAGTCGATTGCCTT
NONE
OsAffx.1331.1.S1_at--707--72110Chr12:3466771..3466790 (20 bp)
GTCGATTGCCTTTATATTGTTATTT
NONE
OsAffx.1331.1.S1_at--727--2092Chr05:18555945..18556114 (25 bp)
ACATCAGGCGTCAAAATCTACATCA
NONE
OsAffx.1331.1.S1_at--764--5319Chr12:20257611..20257720 (25 bp)
ATCGCTATCGGCTGGGTCAAACTGA
NONE
OsAffx.1331.1.S1_at--1061--5031Chr01:8834500..8834524 (25 bp)
GCAGATCTCCAAGGCCAGTGTATAT
NONE
Target Sequence 
GTCTCCGAGGAGCTCATCGCTAAAGAGGGGGAAGGAAGGGGTCTTGCTAAAGATGGTTTCTTGTTAACAGTGAAATTTGC
CTACTTTTTGACTGCCAATAAGGGTTTCATCGAGGTTTCAGCCAATGAGGTTTCTGGACATTGCATCGGCTTGCAAGGAT
TACATCCGATTGGTTTCTACTGGATTATATTGTTGCTTTCTTGCATTTATCATCAGTCGATTGCCTTTATATTGTTATTT
ACATCAGGCGTCAAAATCTACATCAGAATTATAGCCGATAGCTCAAAACCCTATCGCTATCGGCTGGGTCAAACTGACTG
GCACGCTCGCATCTCATCAACCTTTGGACCTGCAATGGAGCTAAGCAGATCTCCAAGGCCAGTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis