Browse Element(s) Details


Os.45173.3.S1_x_at

Description gb:NM_191660.1
DB_XREF= gi:34910403
GEN=P0692C11.25
TID=Os.45173.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0493G01.14 (P0493G01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0692C11.25 (P0692C11.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g199003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g588201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g199901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g456101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g100401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g081101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g269001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g165401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g195801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19860Os.10731.2.A1_at1/115+11550571..11552135transposon protein, putative, unclassified
LOC_Os05g19870NANA5+11554077..11560803retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19880NANA5+11563591..11565410retrotransposon protein, putative, unclassified
LOC_Os05g19890NANA5+11565942..11567222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.10731.1.A1_a_at11/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.38764.1.S1_x_at8/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.46610.1.S1_x_at4/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.8473.1.S1_x_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45173.3.S1_at3/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.48015.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.10263.1.S1_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900OsAffx.20733.1.A1_x_at2/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.51841.1.S1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.3.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.47999.2.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19900Os.45902.1.A1_x_at1/115+11573075..11583869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19910Os.48074.1.A1_at11/115+11588767..11594325Transferase family protein, expressed
LOC_Os05g19920OsAffx.14764.1.S1_at11/115+11599910..11600128hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45173.3.S1_x_at--330--46318Chr12:20211653..20211915 (25 bp)
GCGTTCGGTCGCTGACAGCCGAGCT
NONE
Os.45173.3.S1_x_at--633--67112Chr12:20211655..20211917 (25 bp)
GTTCGGTCGCTGACAGCCGAGCTTT
NONE
Os.45173.3.S1_x_at--411--8952Chr02:9395303..9395323 (21 bp)
TGACAGCCGAGCTTTCCTTCGTCGT
NONE
Os.45173.3.S1_x_at--836--1672Chr02:9395303..9395327 (25 bp)
AGCCGAGCTTTCCTTCGTCGTTGTC
NONE
Os.45173.3.S1_x_at--682--9392Chr02:9395320..9395344 (25 bp)
TCGTTGTCGCCGCCTTGGGCCTTCG
NONE
Os.45173.3.S1_x_at--934--6038Chr10:12266158..12266182 (25 bp)
GAGATCACCGGAGCAGCATCGCCGT
NONE
Os.45173.3.S1_x_at--121--10651Chr01:29687477..29687499 (23 bp)
TTCCTCCGCCGTTTAGGTCACCGTG
NONE
Os.45173.3.S1_x_at--954--4493Chr02:9205246..9205379 (25 bp)
GCCGTTTAGGTCACCGTGCCGCTGT
NONE
Os.45173.3.S1_x_at--451--58935Chr12:5317650..5317674 (25 bp)
GAGCGTGCGCCGTTCGAGCCGTCTC
LOC_Os12g10040
Os.45173.3.S1_x_at--871--3352Chr02:9395810..9395833 (24 bp)
CACCGCTGACGTCATTGGGGTCGTT
NONE
Os.45173.3.S1_x_at--580--72133Chr12:23734333..23734802 (25 bp)
GTCGTTCGCCATTCCGTCGTTTCCG
NONE
Target Sequence 
GCGTTCGGTCGCTGACAGCCGAGCTTTCCTTCGTCGTTGTCGCCGCCTTGGGCCTTCGCCGCCGCCTCCGAGCCCCTTTA
AAAGGACCCCCGGTGTCTCCTCTACCCGTTGCCACCTTCGCCTTCGCCTCTCGTCGTCGGAAAAGCCCTAGCGCCGTGTG
CCCTAGCTTTGCCGTCGCCGCCGCCGCTCCAGCCCCGTCGCCGTCGCTCGGGAAGACCACCGTCGTGCTCGCCAAGTCGT
CGCCGTCCTCGTCCGCCCCTTCGCCGTCGCCGGAGATCACCGGAGCAGCATCGCCGTCGTCGACCCGAAGGTTCCCGCCG
CTTCCTCCTCGTGGCCGTCGCCGTCCGTTGGTCTTCCTCCGCCGTTTAGGTCACCGTGCCGCTGTTCGCCGGCGAGCGTG
CGCCGTTCGAGCCGTCTCCTCCGCCGAGCCGCCGCCGCTGTCGGTGACGTCACCGCTGACGTCATTGGGGTCGTTCGCCA
TTCCGTCGTTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45173.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis