Browse Element(s) Details


OsAffx.8473.1.S1_x_at

Description gb:NM_194990.1
DB_XREF= gi:37531339
TID=OsAffx.8473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0089D15.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g081109/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g266205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g419605/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g165404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g199003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g063603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g199903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g391903/11retrotransposon, putative, centromere-specific
LOC_Os10g081801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08050OsAffx.18169.1.S1_x_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08050OsAffx.18169.1.S1_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08060NANA10+4134853..4136932transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08070NANA10+4137599..4138279hypothetical protein
LOC_Os10g08080NANA10+4140182..4143396hypothetical protein
LOC_Os10g08090OsAffx.22699.1.S1_x_at2/1110+4145100..4147678retrotransposon protein, putative, unclassified
LOC_Os10g08100NANA10+4148504..4150408retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.8473.1.S1_x_at9/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110Os.45173.3.S1_x_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.20877.1.S1_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08120NANA10+4154584..4157339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08130NANA10+4159113..4161963hypothetical protein
LOC_Os10g08140NANA10+4162570..4163472transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08150Os.46306.1.S1_x_at2/1110+4164080..4164928transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08160NANA10+4167562..4169119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08170OsAffx.8471.1.S1_x_at11/1110+4170992..4171282hypothetical protein
LOC_Os10g08170OsAffx.8471.1.S1_at11/1110+4170992..4171282hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8473.1.S1_x_at--1041--37728Chr10:4195237..4195261 (25 bp)
CTCGGTCGTCGTCATCGCTCGGGAA
NONE
OsAffx.8473.1.S1_x_at--197--4514Chr10:4195343..4195503 (25 bp)
GCCGTCAACCCGAACGAGCATGCAA
NONE
OsAffx.8473.1.S1_x_at--236--4254Chr10:4195344..4195504 (25 bp)
CCGTCAACCCGAACGAGCATGCAAG
NONE
OsAffx.8473.1.S1_x_at--7--4034Chr10:4195345..4195505 (25 bp)
CGTCAACCCGAACGAGCATGCAAGC
NONE
OsAffx.8473.1.S1_x_at--1034--2596Chr10:4195349..4195509 (25 bp)
AACCCGAACGAGCATGCAAGCCCGA
NONE
OsAffx.8473.1.S1_x_at--429--18128Chr12:23734202..23734362 (25 bp)
ACCCGAACGAGCATGCAAGCCCGAG
NONE
OsAffx.8473.1.S1_x_at--930--40945Chr12:23734345..23734365 (21 bp)
CGAACGAGCATGCAAGCCCGAGCCG
NONE
OsAffx.8473.1.S1_x_at--665--54546Chr12:23734345..23734366 (22 bp)
GAACGAGCATGCAAGCCCGAGCCGC
NONE
OsAffx.8473.1.S1_x_at--347--25942Chr12:23734345..23734367 (23 bp)
AACGAGCATGCAAGCCCGAGCCGCC
NONE
OsAffx.8473.1.S1_x_at--967--7512Chr12:2063561..2063585 (25 bp)
ATGTCATCGCTGACGTCATCGTCGC
NONE
OsAffx.8473.1.S1_x_at--317--4391NONE
CCAAGGCCAGCAAGAGGAAGAGATC
NONE
Target Sequence 
CTCGGTCGTCGTCATCGCTCGGGAAGGCCACCGTCGTGATCGCCAAGTCGCCGCCGTTCTCGTCCGCTCCTTCGCCGCCG
CCGAAGACCGCCGGAGCACCGTCGCCGCCGTCAACCCGAACGAGCATGCAAGCCCGAGCCGCCGAGCCACCGCCGCCGGT
GGTGATGTCATCGCTGACGTCATCGTCGCCCTCTCCCAGTCCGTTTTCGCCGGAGAAGAGTTTGAAGAGTTCCAAGGCCA
GCAAGAGGAAGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8473.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis