Browse Element(s) Details


OsAffx.31672.1.S1_at

Description tigr:9640.m00939
TID=OsAffx.31672.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1001011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09990OsAffx.435.1.S1_at3/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09990OsAffx.16946.1.S1_at1/1112+5288205..5293586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10000OsAffx.31671.1.S1_at11/1112+5294432..5298002Transposable element protein, putative, Transposase_28
LOC_Os12g10010OsAffx.31672.1.S1_at11/1112+5300720..5302470hypothetical protein
LOC_Os12g10020OsAffx.31673.1.S1_at11/1112+5308741..5309115hypothetical protein
LOC_Os12g10030OsAffx.22896.1.S1_x_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030OsAffx.1331.1.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10030Os.26833.2.S1_at1/1112+5310670..5315018transposon protein, putative, unclassified
LOC_Os12g10040Os.45173.1.S1_x_at3/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20691.1.A1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040Os.45173.3.S1_x_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10040OsAffx.20877.1.S1_at1/1112+5316454..5320877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g10050NANA12+5321142..5324477retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31672.1.S1_at--748--4971Chr12:5301948..5302352 (25 bp)
GCATGACGATGCGACTTCGGGAAGA
LOC_Os12g10010
OsAffx.31672.1.S1_at--1102--7351Chr12:5301921..5301945 (25 bp)
GTGAAAGTGTCATTCCGGTGGTGTT
LOC_Os12g10010
OsAffx.31672.1.S1_at--37--971Chr12:5301883..5301907 (25 bp)
AGGGTGGCCAAACATATTCTTGTCC
LOC_Os12g10010
OsAffx.31672.1.S1_at--564--111Chr12:5301868..5301892 (25 bp)
ATTCTTGTCCCAGCGAAGCTAGTCG
LOC_Os12g10010
OsAffx.31672.1.S1_at--28--9331Chr12:5301861..5301885 (25 bp)
TCCCAGCGAAGCTAGTCGTGGTGGA
LOC_Os12g10010
OsAffx.31672.1.S1_at--489--7551Chr12:5301828..5301852 (25 bp)
GTGGCCTTGACTGGAGCGGCGGCAA
LOC_Os12g10010
OsAffx.31672.1.S1_at--838--3911Chr12:5301696..5301720 (25 bp)
CTGGCGGTGCTTTCTATGGGCTTCG
LOC_Os12g10010
OsAffx.31672.1.S1_at--491--7571Chr12:5301096..5301120 (25 bp)
GGGCTTCCGGCGGTGGTTCACGAAG
LOC_Os12g10010
OsAffx.31672.1.S1_at--695--7591Chr12:5301065..5301089 (25 bp)
GGGCAGATAAGCTCCACCACAACCT
LOC_Os12g10010
OsAffx.31672.1.S1_at--1002--9191Chr12:5301053..5301077 (25 bp)
TCCACCACAACCTGGCGTACAAGGT
LOC_Os12g10010
OsAffx.31672.1.S1_at--1037--8951Chr12:5300786..5300810 (25 bp)
TGAAAGCGTCGTTCTGGTGGTGTTC
LOC_Os12g10010
Target Sequence 
GCATGACGATGCGACTTCGGGAAGATAGTGAAAGTGTCATTCCGGTGGTGTTGAGGGACGATGGAAGGGTGGCCAAACAT
ATTCTTGTCCCAGCGAAGCTAGTCGTGGTGGAGGCAAGGCGTGGCCTTGACTGGAGCGGCGGCAAGCAGCGGCTGGAAGG
CGGAGAACGACGGCGTAACTTGGGTGCCGTGGTGAGGGAGTTGTTTCGGGGAGCGATTGAGCATAGCGAGGGGAAAAATG
AGAGGGGGAGGCCTGGCGGTGCTTTCTATGGGCTTCGGGTGGAGGGCGGCAAGCGGCACAAAATGGGGAGGCATGATGGT
GGCGAGTGCTTGGGCGGCGACGCTTCGTGGGTCGATGGTAGGAAGGGGCTTCCGGCGGTGGTTCACGAAGGCGGAGGGGC
AGATAAGCTCCACCACAACCTGGCGTACAAGGTGACGAAGTTAGGGAGGAGAGCTAGAGTGGCGTTGAGTGGCAGCTGGA
AGCGGTGGTGGCTTTGGGAAGATGGTGAAAGCGTCGTTCTGGTGGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis