Browse Element(s) Details


OsAffx.435.1.S1_at

Description gb:NM_194539.1
DB_XREF= gi:37530437
TID=OsAffx.435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015O22.5), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0189011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g099903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g309901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g125501/11retrotransposon protein, putative, unclassified
LOC_Os06g199001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g174501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g342401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g239701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g200101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein
LOC_Os10g01890OsAffx.435.1.S1_at11/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01890OsAffx.19377.1.S1_at1/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01900OsAffx.20810.1.S1_at11/1110+558728..559919retrotransposon protein, putative, LINE subclass
LOC_Os10g01910OsAffx.20809.1.S1_at11/1110+560328..565291retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g01920Os.46590.1.S1_at11/1110+567171..568806Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_x_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.2.S1_s_at1/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01940NANA10+578743..581549hypothetical protein
LOC_Os10g01950OsAffx.22699.1.S1_x_at2/1110+582287..586057retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.435.1.S1_at--814--7152Chr10:555296..555320 (25 bp)
GTCTATGGAAAAATGCTTCGCAGGC
LOC_Os10g01890
OsAffx.435.1.S1_at--35--1412Chr06:19936765..19936784 (20 bp)
AGACACCTTGGCGAAGTCTGCTGCT
LOC_Os06g34240
OsAffx.435.1.S1_at--183--1715Chr12:10000954..10000975 (22 bp)
ACCAAGTGTGCCCATAGAGAGCTTG
LOC_Os12g17450
OsAffx.435.1.S1_at--347--2331Chr10:555068..555092 (25 bp)
AAAGTACCTCGATTGTGGCTGGCTT
LOC_Os10g01890
OsAffx.435.1.S1_at--1066--4433Chr12:5292706..5292730 (25 bp)
GCCTTCAACTCAGAGCCGCAAAGTA
LOC_Os12g09990
OsAffx.435.1.S1_at--1044--811Chr10:554989..555013 (25 bp)
ATGGTCTCGGGCCAACTATATCGTT
LOC_Os10g01890
OsAffx.435.1.S1_at--582--3891Chr10:554885..554909 (25 bp)
CTGTGGCGCACACCAGGACGTAAGA
LOC_Os10g01890
OsAffx.435.1.S1_at--615--8111Chr10:554870..554894 (25 bp)
GGACGTAAGAGCAGTTGCCTCAAAA
LOC_Os10g01890
OsAffx.435.1.S1_at--750--2454Chr12:5292889..5292910 (22 bp)
AACAAGGTGTGTACTGGCCCACCGT
LOC_Os12g09990
OsAffx.435.1.S1_at--79--8411Chr10:554823..554847 (25 bp)
GGCCCACCGTGCTGAAGGTCTGTGT
LOC_Os10g01890
OsAffx.435.1.S1_at--1134--2891Chr10:554809..554833 (25 bp)
AAGGTCTGTGTCGAGCAGGTCAAGA
LOC_Os10g01890
Target Sequence 
GTCTATGGAAAAATGCTTCGCAGGCATAACGGTCGAACATTTACCTAGAGGCCAGAACGAGGAAGCAGACACCTTGGCGA
AGTCTGCTGCTTGTGGGGGCCCACATTCGCTGGGCATCTTTTTTGAAGTCCTATACGCACCAAGTGTGCCCATAGAGAGC
TTGGAGGTCATGGCAATCGACCAGGCAGAACTGGGCAATGATCCAGAGGACTGGCGAACACCGTTCGTAAAGTACCTCGA
TTGTGGCTGGCTTCCGGAAGATGAAGCAGAAGCAAAGCGCCTTCAACTCAGAGCCGCAAAGTACAAGATGGTCTCGGGCC
AACTATATCGTTCCGGGGTGCTTCAACCTTTGCTTCGCTGCATCTCTTTTGCCGAAGGCGAGAAAATGGCGAAGGAAATA
CACCAGGGGCTCTGTGGCGCACACCAGGACGTAAGAGCAGTTGCCTCAAAAGTGTTTCAACAAGGTGTGTACTGGCCCAC
CGTGCTGAAGGTCTGTGTCGAGCAGGTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis