Browse Element(s) Details


OsAffx.20808.2.S1_s_at

Description tigr:9638.m00103
TID=OsAffx.20808.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0200011/11Transferase family protein
LOC_Os10g019301/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01970NANA10+591288..593051retrotransposon protein, putative, unclassified
LOC_Os10g01984OsAffx.31757.1.S1_at11/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.46306.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984OsAffx.13124.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.47606.1.A1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02000OsAffx.20808.2.S1_s_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.2.S1_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.1.S1_x_at3/1110+616305..617447Transferase family protein
LOC_Os10g02010Os.45976.1.S1_x_at2/1110+619464..623176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02020NANA10+627966..628403hypothetical protein
LOC_Os10g02030Os.46306.1.S1_x_at2/1110+629994..635192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02040Os.11565.1.S1_at11/1110+639761..643042Peroxidase 53 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20808.2.S1_s_at--730--3532Chr10:617227..617251 (25 bp)
CATCCTGGCGAAACATCGGATTCGA
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--64--4591Chr10:617234..617258 (25 bp)
GCGAAACATCGGATTCGAGGATGTT
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--725--991Chr10:617251..617275 (25 bp)
AGGATGTTGATTTCGGCAGCGGCAA
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--28--4231Chr10:617298..617322 (25 bp)
CCGCAGAGGGAGGTGTTCTCCAAGA
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--1139--7731Chr10:617309..617333 (25 bp)
GGTGTTCTCCAAGAAAATGCCCATC
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--764--2751Chr10:617319..617343 (25 bp)
AAGAAAATGCCCATCTGCTTCATGC
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--1111--9471Chr10:617332..617356 (25 bp)
TCTGCTTCATGCTCAAGAACACACC
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--851--9631Chr10:617376..617400 (25 bp)
TCAGGCTGTGTTAAAGCTCACCATG
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--533--4731Chr10:617380..617404 (25 bp)
GCTGTGTTAAAGCTCACCATGCCGA
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--145--8651Chr10:617382..617406 (25 bp)
TGTGTTAAAGCTCACCATGCCGACG
LOC_Os10g02000
OsAffx.20808.2.S1_s_at--580--10491Chr10:617386..617410 (25 bp)
TTAAAGCTCACCATGCCGACGCCTT
LOC_Os10g02000
Target Sequence 
CATCCTGGCGAAACATCGGATTCGAGGATGTTGATTTCGGCAGCGGCAAGACGGCGAGGGTGATGACCTACCCGCAGAGG
GAGGTGTTCTCCAAGAAAATGCCCATCTGCTTCATGCTCAAGAACACACCACAAGGGGCTAGGGTGATTTCAGGCTGTGT
TAAAGCTCACCATGCCGACGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20808.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis