Browse Element(s) Details


Os.47606.1.A1_at

Description gb:BX900999
DB_XREF= gi:40493859
DB_XREF=BX900999
CLONE=y808a10p3
TID=Os.47606.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47606 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g019841/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01930OsAffx.20808.1.S1_x_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.2.S1_s_at1/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01940NANA10+578743..581549hypothetical protein
LOC_Os10g01950OsAffx.22699.1.S1_x_at2/1110+582287..586057retrotransposon protein, putative, unclassified
LOC_Os10g01960NANA10+586385..589183retrotransposon protein, putative, unclassified
LOC_Os10g01970NANA10+591288..593051retrotransposon protein, putative, unclassified
LOC_Os10g01984OsAffx.31757.1.S1_at11/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.46306.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984OsAffx.13124.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.47606.1.A1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02000OsAffx.20808.2.S1_s_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.2.S1_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.1.S1_x_at3/1110+616305..617447Transferase family protein
LOC_Os10g02010Os.45976.1.S1_x_at2/1110+619464..623176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02020NANA10+627966..628403hypothetical protein
LOC_Os10g02030Os.46306.1.S1_x_at2/1110+629994..635192transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47606.1.A1_at--143--591NONE
ATCCACATCTTCTTTGACCTCCTGT
NONE
Os.47606.1.A1_at--1145--6371NONE
GATCTGTTCGACGTTGTCCGATTCG
NONE
Os.47606.1.A1_at--259--7251NONE
GTCCGATTCGAGACTCCACCGAGGA
NONE
Os.47606.1.A1_at--937--9191Chr02:32552905..32552924 (20 bp)
TCCACCGAGGAGAGGACCGCTGGAT
NONE
Os.47606.1.A1_at--380--1311NONE
AGAGGTGAGTCCTCCGACCATCGGA
NONE
Os.47606.1.A1_at--185--5911NONE
GAGCTCAAGCTCGAGTCCGCCGGAT
NONE
Os.47606.1.A1_at--875--231NONE
ATATATATGTGCCTGTTTTTCGAAA
NONE
Os.47606.1.A1_at--320--10351Chr10:601856..601876 (21 bp)
TTTATGTTTATAGCGCTACCCTAGA
LOC_Os10g01984
Os.47606.1.A1_at--337--9531NONE
TCTCATCTGAGCGTTGTACTTGTCT
NONE
Os.47606.1.A1_at--696--4631NONE
GCGTTGTACTTGTCTGGAACACGAA
NONE
Os.47606.1.A1_at--1058--651NONE
ATGCAACAGCATGTGTGCGATACAC
NONE
Target Sequence 
ATCCACATCTTCTTTGACCTCCTGTCCGTGTCGATCTGTTCGACGTTGTCCGATTCGAGACTCCACCGAGGAGAGGACCG
CTGGATGGGGGGAGAGGTGAGTCCTCCGACCATCGGAGGAGAGAAGAGGAAGAGGAGCTCAAGCTCGAGTCCGCCGGATG
GGGAGAGGCAGGACCTCCGACTGTGGGAGGAGAGGAGATGTGGAGCCCCGGCGCAGTGTGGGCGAGGTGGGAGGCGACCG
GATAGGGTTTGGAGAAGCATATATATGTGCCTGTTTTTCGAAAAAAACTTCGTATTTTTTATGTTTATAGCGCTACCCTA
GAAGCGAAATTTTCTCATCTGAGCGTTGTACTTGTCTGGAACACGAAGGGTTTTCCGTAAGAAATGCAACAGCATGTGTG
CGATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47606.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis