Browse Element(s) Details


OsAffx.20808.2.S1_at

Description tigr:9638.m00103
TID=OsAffx.20808.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0200011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01970NANA10+591288..593051retrotransposon protein, putative, unclassified
LOC_Os10g01984OsAffx.31757.1.S1_at11/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.46306.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_x_at2/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984OsAffx.13124.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.47606.1.A1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g01984Os.45976.1.S1_at1/1110+598574..613608transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02000OsAffx.20808.2.S1_s_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.2.S1_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.1.S1_x_at3/1110+616305..617447Transferase family protein
LOC_Os10g02010Os.45976.1.S1_x_at2/1110+619464..623176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02020NANA10+627966..628403hypothetical protein
LOC_Os10g02030Os.46306.1.S1_x_at2/1110+629994..635192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02040Os.11565.1.S1_at11/1110+639761..643042Peroxidase 53 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20808.2.S1_at--494--8871Chr10:616849..616873 (25 bp)
TGATGGACCACATCATCCGAGGACG
LOC_Os10g02000
OsAffx.20808.2.S1_at--1138--6231Chr10:616850..616874 (25 bp)
GATGGACCACATCATCCGAGGACGA
LOC_Os10g02000
OsAffx.20808.2.S1_at--48--851Chr10:616851..616875 (25 bp)
ATGGACCACATCATCCGAGGACGAA
LOC_Os10g02000
OsAffx.20808.2.S1_at--916--8531Chr10:616852..616876 (25 bp)
TGGACCACATCATCCGAGGACGAAC
LOC_Os10g02000
OsAffx.20808.2.S1_at--583--8091Chr10:616853..616877 (25 bp)
GGACCACATCATCCGAGGACGAACG
LOC_Os10g02000
OsAffx.20808.2.S1_at--77--5851Chr10:616854..616878 (25 bp)
GACCACATCATCCGAGGACGAACGA
LOC_Os10g02000
OsAffx.20808.2.S1_at--623--951Chr10:616868..616892 (25 bp)
AGGACGAACGACCAACGTCACCGTG
LOC_Os10g02000
OsAffx.20808.2.S1_at--525--8071Chr10:616869..616893 (25 bp)
GGACGAACGACCAACGTCACCGTGT
LOC_Os10g02000
OsAffx.20808.2.S1_at--651--5791Chr10:616870..616894 (25 bp)
GACGAACGACCAACGTCACCGTGTT
LOC_Os10g02000
OsAffx.20808.2.S1_at--889--4091Chr10:616872..616896 (25 bp)
CGAACGACCAACGTCACCGTGTTCG
LOC_Os10g02000
OsAffx.20808.2.S1_at--462--5611Chr10:616943..616967 (25 bp)
GACAAATCCAGAGGCCCCCGCCGTG
LOC_Os10g02000
Target Sequence 
TGATGGACCACATCATCCGAGGACGAACGACCAACGTCACCGTGTTCGAGGCGGTCGCCGCCGTGCTTTGGCAGTGCCGA
ACCCGGGCGGTGATGACAAATCCAGAGGCCCCCGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20808.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis