Browse Element(s) Details


Os.49373.1.S1_at

Description gb:AK069149.1
DB_XREF= gi:32979173
TID=Os.49373.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007D16, full insert sequence.
FL= gb:AK069149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1092011/11expressed protein
LOC_Os08g073801/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g112901/11hypothetical protein
LOC_Os10g018501/11retrotransposon, putative, centromere-specific
LOC_Os12g037601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10890NANA5+6013510..6018549retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10900OsAffx.14627.1.S1_at11/115+6025977..6029301hypothetical protein
LOC_Os05g10900Os.47518.1.A1_at4/115+6025977..6029301hypothetical protein
LOC_Os05g10910OsAffx.14628.1.S1_at11/115+6029504..6030094expressed protein
LOC_Os05g10920Os.49373.1.S1_at11/115+6036677..6039590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49373.1.S1_at--1038--8191Chr05:6037221..6037245 (25 bp)
GGAATATCGTCCCACCTAAGGATGT
LOC_Os05g10920
Os.49373.1.S1_at--903--3731Chr05:6037206..6037230 (25 bp)
CTAAGGATGTCATAGAGTTCCACAT
LOC_Os05g10920
Os.49373.1.S1_at--279--1351Chr05:6037193..6037217 (25 bp)
AGAGTTCCACATTACATCTCAGCAC
LOC_Os05g10920
Os.49373.1.S1_at--17--3591Chr05:6037184..6037208 (25 bp)
CATTACATCTCAGCACCGCTTTTTT
LOC_Os05g10920
Os.49373.1.S1_at--155--10371Chr05:6037162..6037186 (25 bp)
TTTTTTTATCAACGCGTCCTCGAGT
LOC_Os05g10920
Os.49373.1.S1_at--810--4651Chr05:6037149..6037173 (25 bp)
GCGTCCTCGAGTAGTACCTGTTAAT
LOC_Os05g10920
Os.49373.1.S1_at--1160--6071Chr05:6037141..6037165 (25 bp)
GAGTAGTACCTGTTAATGACCAAAT
LOC_Os05g10920
Os.49373.1.S1_at--481--11114Chr12:11231151..11231170 (20 bp)
AGTACCTGTTAATGACCAAATTTGG
NONE
Os.49373.1.S1_at--989--108370Chr12:8222501..8222521 (21 bp)
TTGGTAATATCAGCATCGGAAGAGG
NONE
Os.49373.1.S1_at--936--3391Chr05:6037106..6037130 (25 bp)
CAGCATCGGAAGAGGAGTCTAGATC
LOC_Os05g10920
Os.49373.1.S1_at--222--5295Chr11:11262394..11262418 (25 bp)
GAAGGCGGAGATTGATTCGAGAACA
NONE
Target Sequence 
GGAATATCGTCCCACCTAAGGATGTCATAGAGTTCCACATTACATCTCAGCACCGCTTTTTTTTTTTATCAACGCGTCCT
CGAGTAGTACCTGTTAATGACCAAATTTGGTAATATCAGCATCGGAAGAGGAGTCTAGATCGAGGTGGAGTCGAAGGCGG
AGATTGATTCGAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis