Browse Element(s) Details


OsAffx.14627.1.S1_at

Description tigr:9633.m00953
TID=OsAffx.14627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1090011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10870NANA5+5999516..6005529retrotransposon protein, putative, unclassified
LOC_Os05g10880Os.31312.1.S1_at1/115+6005985..6006612retrotransposon protein, putative, unclassified
LOC_Os05g10890NANA5+6013510..6018549retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10900OsAffx.14627.1.S1_at11/115+6025977..6029301hypothetical protein
LOC_Os05g10900Os.47518.1.A1_at4/115+6025977..6029301hypothetical protein
LOC_Os05g10910OsAffx.14628.1.S1_at11/115+6029504..6030094expressed protein
LOC_Os05g10920Os.49373.1.S1_at11/115+6036677..6039590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14627.1.S1_at--279--7351Chr05:6027976..6028000 (25 bp)
GTGCAACTACTCTACAATGTGACCA
LOC_Os05g10900
OsAffx.14627.1.S1_at--22--7411Chr05:6028002..6028408 (25 bp)
GTGATCTATGATGCTTCGGTTCCTA
LOC_Os05g10900
OsAffx.14627.1.S1_at--554--10591Chr05:6028401..6028422 (22 bp)
TTCGGTTCCTATCCTGGGAGTCAGT
LOC_Os05g10900
OsAffx.14627.1.S1_at--927--7111Chr05:6028417..6028441 (25 bp)
GTCAGTCTCTTCTATCGTTGTTTCA
LOC_Os05g10900
OsAffx.14627.1.S1_at--714--111Chr05:6028449..6028473 (25 bp)
ATTCAGTTCCTTCTTGATTCCACAA
LOC_Os05g10900
OsAffx.14627.1.S1_at--390--2891Chr05:6028490..6028514 (25 bp)
AAGGGTATCCTGAGCTGCTTCACTT
LOC_Os05g10900
OsAffx.14627.1.S1_at--295--5271Chr05:6028533..6028557 (25 bp)
GAATCCATTTGGTGCCTATAGCCAG
LOC_Os05g10900
OsAffx.14627.1.S1_at--87--10291Chr05:6029015..6029039 (25 bp)
TTTCCAGACTGGGTTACTGCACTCG
LOC_Os05g10900
OsAffx.14627.1.S1_at--904--2491Chr05:6029055..6029079 (25 bp)
AACATCCTGATATGCCCTCTGATAA
LOC_Os05g10900
OsAffx.14627.1.S1_at--99--4551Chr05:6029068..6029092 (25 bp)
GCCCTCTGATAACTGGTGCTATGCA
LOC_Os05g10900
OsAffx.14627.1.S1_at--113--7331Chr05:6029083..6029261 (25 bp)
GTGCTATGCAGGTTTTGATTTCCCA
LOC_Os05g10900
Target Sequence 
GTGCAACTACTCTACAATGTGACCATGTGATCTATGATGCTTCGGTTCCTATCCTGGGAGTCAGTCTCTTCTATCGTTGT
TTCATCAATCTATTCAGTTCCTTCTTGATTCCACAAGGTGCTTTTGACAAGGAAGGGTATCCTGAGCTGCTTCACTTTCA
TGCATTCAATTTAGTGAATCCATTTGGTGCCTATAGCCAGAGAACTTTCCAGACTGGGTTACTGCACTCGTCCACGATGG
GGCTCAACATCCTGATATGCCCTCTGATAACTGGTGCTATGCAGGTTTTGATTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis