Browse Element(s) Details


Os.31312.1.S1_at

Description gb:AK119914.1
DB_XREF= gi:37989537
TID=Os.31312.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0024F24.28 (OSJNBa0024F24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F06, full insert sequence.
FL= gb:AK119914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g4003011/11retrotransposon protein, putative, unclassified
LOC_Os09g4006011/11retrotransposon protein, putative, unclassified
LOC_Os11g203008/11retrotransposon protein, putative, unclassified
LOC_Os09g398908/11retrotransposon protein, putative, unclassified
LOC_Os07g405906/11retrotransposon protein, putative, unclassified
LOC_Os04g098303/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g555401/11retrotransposon protein, putative, unclassified
LOC_Os05g108801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g40010Os.31312.2.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40010Os.31312.5.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40014Os.33878.1.S1_at6/119+22958069..22961703hypothetical protein
LOC_Os09g40018Os.31312.5.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified
LOC_Os09g40018Os.31312.2.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified
LOC_Os09g40022Os.33878.1.S1_at6/119+22971743..22975376hypothetical protein
LOC_Os09g40030Os.31312.1.S1_at11/119+22976301..22979908retrotransposon protein, putative, unclassified
LOC_Os09g40030Os.31312.5.S1_x_at5/119+22976301..22979908retrotransposon protein, putative, unclassified
LOC_Os09g40030Os.31312.2.S1_x_at4/119+22976301..22979908retrotransposon protein, putative, unclassified
LOC_Os09g40040OsAffx.22492.1.S1_at1/119+22980231..22986386retrotransposon protein, putative, unclassified
LOC_Os09g40040OsAffx.22492.1.S1_x_at1/119+22980231..22986386retrotransposon protein, putative, unclassified
LOC_Os09g40050OsAffx.9045.1.S1_x_at3/119+22988137..22995074retrotransposon protein, putative, unclassified
LOC_Os09g40050OsAffx.9045.1.S1_at2/119+22988137..22995074retrotransposon protein, putative, unclassified
LOC_Os09g40050OsAffx.22492.1.S1_x_at1/119+22988137..22995074retrotransposon protein, putative, unclassified
LOC_Os09g40050OsAffx.22492.1.S1_at1/119+22988137..22995074retrotransposon protein, putative, unclassified
LOC_Os09g40060Os.31312.1.S1_at11/119+22995378..22998985retrotransposon protein, putative, unclassified
LOC_Os09g40060Os.31312.5.S1_x_at5/119+22995378..22998985retrotransposon protein, putative, unclassified
LOC_Os09g40060Os.31312.2.S1_x_at4/119+22995378..22998985retrotransposon protein, putative, unclassified
LOC_Os09g40075Os.33878.1.S1_at6/119+22999910..23003544hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31312.1.S1_at--417--104142Chr12:1119044..1119068 (25 bp)
TTTTGTGTTAATTTCATCTTGCTGT
NONE
Os.31312.1.S1_at--1111--86740Chr12:1119047..1119071 (25 bp)
TGTGTTAATTTCATCTTGCTGTGAG
NONE
Os.31312.1.S1_at--816--36340Chr12:1119061..1119085 (25 bp)
CTTGCTGTGAGTATGAGATGAGGAT
NONE
Os.31312.1.S1_at--689--86545Chr12:1119106..1119130 (25 bp)
TGTGTCTTAGCTTGAATAAGGGCTT
NONE
Os.31312.1.S1_at--421--104531Chr12:1119112..1119136 (25 bp)
TTAGCTTGAATAAGGGCTTGTGCCC
NONE
Os.31312.1.S1_at--959--3526Chr12:1119121..1119145 (25 bp)
ATAAGGGCTTGTGCCCAGGTTCTGG
NONE
Os.31312.1.S1_at--333--108327Chr12:1119129..1119153 (25 bp)
TTGTGCCCAGGTTCTGGTCCTCAAA
NONE
Os.31312.1.S1_at--379--72936Chr12:1119131..1119155 (25 bp)
GTGCCCAGGTTCTGGTCCTCAAAAG
NONE
Os.31312.1.S1_at--461--34732Chr12:1119136..1119160 (25 bp)
CAGGTTCTGGTCCTCAAAAGGCGCG
NONE
Os.31312.1.S1_at--735--66934Chr12:1119139..1119163 (25 bp)
GTTCTGGTCCTCAAAAGGCGCGGGT
NONE
Os.31312.1.S1_at--763--94573Chr12:1119141..1119165 (25 bp)
TCTGGTCCTCAAAAGGCGCGGGTCG
NONE
Target Sequence 
TTTTGTGTTAATTTCATCTTGCTGTGAGTATGAGATGAGGATGATCTGTGCCGTGGTCCTTTTGTGTCTTAGCTTGAATA
AGGGCTTGTGCCCAGGTTCTGGTCCTCAAAAGGCGCGGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis