Browse Element(s) Details


OsAffx.9045.1.S1_at

Description gb:NM_193214.1
DB_XREF= gi:34913511
GEN=OJ1029_F04.7
TID=OsAffx.9045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.7 (OJ1029_F04.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g123403/11retrotransposon protein, putative, unclassified
LOC_Os11g094003/11retrotransposon protein, putative, unclassified
LOC_Os02g536403/11retrotransposon protein, putative, unclassified
LOC_Os09g398803/11hypothetical protein
LOC_Os04g460793/11phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os06g499503/11retrotransposon protein, putative, unclassified
LOC_Os03g126502/11retrotransposon protein, putative, unclassified
LOC_Os09g400502/11retrotransposon protein, putative, unclassified
LOC_Os08g240201/11retrotransposon protein, putative, unclassified
LOC_Os07g360101/11transposon protein, putative, unclassified
LOC_Os03g163001/11transposon protein, putative, unclassified
LOC_Os07g462601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g240401/11retrotransposon protein, putative, unclassified
LOC_Os03g023701/11calcineurin-like phosphoesterase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein
LOC_Os01g12390Os.28972.1.S1_at11/111+6763301..6766915leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9045.1.S1_at--784--10631Chr01:19654436..19654460 (25 bp)
TTCGAGCGTCGAGGGAGCTCCACGT
NONE
OsAffx.9045.1.S1_at--154--9391Chr01:19654444..19654468 (25 bp)
TCGAGGGAGCTCCACGTGCCAATGA
NONE
OsAffx.9045.1.S1_at--627--1071Chr01:19654447..19654471 (25 bp)
AGGGAGCTCCACGTGCCAATGACGG
NONE
OsAffx.9045.1.S1_at--892--8071Chr01:19654449..19654473 (25 bp)
GGAGCTCCACGTGCCAATGACGGGC
NONE
OsAffx.9045.1.S1_at--1134--3311Chr01:19654456..19654480 (25 bp)
CACGTGCCAATGACGGGCCGTGCCT
NONE
OsAffx.9045.1.S1_at--68--5331Chr01:19654493..19654517 (25 bp)
GACACGGCCCGCTACGAAAACCGTG
NONE
OsAffx.9045.1.S1_at--588--4851Chr01:19654503..19654523 (21 bp)
GCTACGAAAACCGTGCTGCTGATCT
NONE
OsAffx.9045.1.S1_at--784--7311NONE
GTGCTGCTGATCTCCCAAAACACAG
NONE
OsAffx.9045.1.S1_at--584--911148Chr12:26562571..26562591 (21 bp)
TGCTGATCTCCCAAAACACAGGAGT
NONE
OsAffx.9045.1.S1_at--118--87369Chr12:26562653..26562677 (25 bp)
TGTCTCGCGAGCCTTCCACATACAG
NONE
OsAffx.9045.1.S1_at--1085--37970Chr12:9171414..9171438 (25 bp)
CTCGCGAGCCTTCCACATACAGAGA
NONE
Target Sequence 
TTCGAGCGTCGAGGGAGCTCCACGTGCCAATGACGGGCCGTGCCTTGGGGTTGGCACGACACGGCCCGCTACGAAAACCG
TGCTGCTGATCTCCCAAAACACAGGAGTAGGGTATTACGCTTCTCAGCGGCCCGAACCTGTATACATCGCGTGTGTCTTG
TGTGTTTCCTGTCTCGCGAGCCTTCCACATACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis