Browse Element(s) Details


OsAffx.22097.2.S1_x_at

Description gb:NM_188518.1
DB_XREF= gi:34904119
TID=OsAffx.22097.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1230011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22097.2.S1_x_at--718--6151Chr01:6714024..6714048 (25 bp)
GAGGTTTGGCTTATCTACATGAGGA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--1118--8551Chr01:6714054..6714078 (25 bp)
TGGATTGCATTGTGCACTGCGACAT
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--379--6471Chr01:6714086..6714110 (25 bp)
GATAACGTACTTCTTGACACTGATT
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--713--10311Chr01:6714109..6714133 (25 bp)
TTTCTGTCCCAAGATCGCAGACTTT
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--462--251Chr01:6714199..6714223 (25 bp)
ATATCTTGCGCCAGAGTGGATCTCA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--768--7511Chr01:6714214..6714238 (25 bp)
GTGGATCTCAGGACTACCCATTACA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--479--4891Chr01:6714271..6714295 (25 bp)
GCTTCTTGAAATCATATCCGGGCGA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--209--2051Chr01:6714333..6714357 (25 bp)
ACTTTCCCATCTATGCTGCATGTAA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--1113--7751Chr01:6714368..6714392 (25 bp)
GGTGATGTTATGTGCCTGTTGGATA
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--331--811Chr01:6714521..6714545 (25 bp)
ATGGATGTTTTAGTCCCTCCTATTC
LOC_Os01g12300
OsAffx.22097.2.S1_x_at--105--7091Chr01:6714550..6714574 (25 bp)
GTCACTTCAGAACTTTGTGGGCATG
LOC_Os01g12300
Target Sequence 
GAGGTTTGGCTTATCTACATGAGGAATGCATGGATTGCATTGTGCACTGCGACATGAAACCAGATAACGTACTTCTTGAC
ACTGATTTCTGTCCCAAGATCGCAGACTTTGGTATGGCAAAACTTTTGAATCGAGATTTCAGCAGGGCACTGACAACAAT
GCGAGGGACTATAGGATATCTTGCGCCAGAGTGGATCTCAGGACTACCCATTACACATAAGGCAGATGTTTACAGCTATG
GATTGATGCTTCTTGAAATCATATCCGGGCGAAGAAACTCGGAGAAGATCAAGGAAGGGAGGCACACTTACTTTCCCATC
TATGCTGCATGTAAGGTGAATGAAGGTGATGTTATGTGCCTGTTGGATAGCAGGCTGGAGGGAAATGCTGATGCAGAGCA
GCTGGAAAGAGCTTGCAGAATTGCATGCTGGTGCATTCAAGATTATGAGGATCAAAGGCCAATGATGGGGCAAGTTGTTC
TCATGCTAGAGGGTGTTATGGATGTTTTAGTCCCTCCTATTCCGATGTCACTTCAGAACTTTGTGGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22097.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis