Browse Element(s) Details


Os.36177.1.S1_at

Description gb:AK064262.1
DB_XREF= gi:32974280
TID=Os.36177.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-D07, full insert sequence.
FL= gb:AK064262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1225010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36177.1.S1_at--80--4671Chr01:6691387..6691411 (25 bp)
GCGTGCACCGACATGGTCTGCGAGA
LOC_Os01g12250
Os.36177.1.S1_at--1161--8271Chr01:6691261..6691285 (25 bp)
GGCATTAGCTCGAGCAGCGTCTGAA
LOC_Os01g12250
Os.36177.1.S1_at--586--2371Chr01:6691238..6691262 (25 bp)
AAACCGCCATTGTTGTTTCGGCCAG
LOC_Os01g12250
Os.36177.1.S1_at--154--6851Chr01:6691224..6691248 (25 bp)
GTTTCGGCCAGGACATGACACGACA
LOC_Os01g12250
Os.36177.1.S1_at--1141--851Chr01:6691071..6691095 (25 bp)
ATGGCGTCTGCTGCACGACGTGAGA
LOC_Os01g12250
Os.36177.1.S1_at--204--2351Chr01:6691029..6691053 (25 bp)
AACACTTGTCCGTGCTTGGACGTAA
LOC_Os01g12250
Os.36177.1.S1_at--476--8631Chr01:6691002..6691026 (25 bp)
TGTCATGTACAAGTCCCGGGAATCC
LOC_Os01g12250
Os.36177.1.S1_at--488--113Chr01:6559730..6559754 (25 bp)
ATTCTTGGCTTCGAGTGTGCGTTAC
NONE
Os.36177.1.S1_at--671--5651Chr01:6690925..6690949 (25 bp)
GACAGGTCAATGTTGCCATCTTTTT
LOC_Os01g12250
Os.36177.1.S1_at--244--6891Chr01:6690850..6690874 (25 bp)
GTATATATTACCTTGTCACATGCGT
LOC_Os01g12250
Os.36177.1.S1_at--575--3531Chr01:6690832..6690856 (25 bp)
CATGCGTGTTTACTTTGTATGCCTC
NONE
Target Sequence 
GCGTGCACCGACATGGTCTGCGAGACGCCGATGACGGTGGCCGCCTCGGGGAAGAGGAAGCCGGGCGACGCCGCCGGGTC
ACTCGCGACGGTGTCCAAGGCCCTCTTCCACGACGACGAGGCGGCGGGCATTAGCTCGAGCAGCGTCTGAAACCGCCATT
GTTGTTTCGGCCAGGACATGACACGACACGACGATGTGCCTCATGAGGGCATGCATGCCGGGCCAGATGGCGTCTGCTGC
ACGACGTGAGAGAGGCGGGGTACCAGGAAACACTTGTCCGTGCTTGGACGTAACGTGTCATGTACAAGTCCCGGGAATCC
GGATTCAGAGATTCTTGGCTTCGAGTGTGCGTTACGCCAAGGTAAACACCATGACAGGTCAATGTTGCCATCTTTTTTTA
TGCTACCGTGTTCTTTTATTATTTTTACCAAAGAAAAATACGCTACTGTATATATTACCTTGTCACATGCGTGTTTACTT
TGTATGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis