Browse Element(s) Details


Os.3748.1.S1_at

Description gb:AK072778.1
DB_XREF= gi:32982801
TID=Os.3748.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139P14, full insert sequence.
FL= gb:AK072778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122609/11Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os05g070001/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0007030biological_processGolgi organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005753cellular_componentproton-transporting ATP synthase complex (sensu Eukaryota)
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3748.1.S1_at--455--3471Chr01:6696773..6696797 (25 bp)
CAGGTAGCTGCTTGACCGATTCATA
LOC_Os01g12260
Os.3748.1.S1_at--730--991Chr01:6696743..6696767 (25 bp)
AGGATGCTGCACAATACCGTTTTCT
LOC_Os01g12260
Os.3748.1.S1_at--548--10111Chr01:6696636..6696660 (25 bp)
TATAGGGAGCCACTGTCATCAAACT
LOC_Os01g12260
Os.3748.1.S1_at--44--3431Chr01:6696610..6696634 (25 bp)
CAGACCTTAGTATTGCCGATAGCGA
LOC_Os01g12260
Os.3748.1.S1_at--719--8791Chr01:6696574..6696598 (25 bp)
TGTTCATGTTGCTCACGATTTCTCA
LOC_Os01g12260
Os.3748.1.S1_at--754--8391Chr01:6696543..6696567 (25 bp)
GGCCTAAGAGGTGTAGTTATCCCAT
LOC_Os01g12260
Os.3748.1.S1_at--325--10191Chr01:6696437..6696461 (25 bp)
TATACCAAGGCCTCTCTTAGAATGA
LOC_Os01g12260
Os.3748.1.S1_at--1091--10851NONE
TTGGAAGTGCCCTGCAGTGCAAGAT
NONE
Os.3748.1.S1_at--1108--10151NONE
TATCTGACATCCCTTTCTCTAAGAA
NONE
Os.3748.1.S1_at--345--3671Chr01:6696302..6696324 (23 bp)
CTTTTGGCCGCTTGTACAGAGTTTA
LOC_Os01g12260
Os.3748.1.S1_at--906--5452Chr05:3653513..3653662 (24 bp)
GAACTGCACTGCTGGTTTCTGCACA
LOC_Os05g07000
Target Sequence 
CAGGTAGCTGCTTGACCGATTCATAAATACAGGATGCTGCACAATACCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGC
ATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGAGCCACTGTCATCAAA
CTACAGACCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAATAAGGCCTAAGAG
GTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAATCCATTGTCATTTATTCATCTGTTATTTGTTTTT
GTTTTCATGGAAATAATATACCAAGGCCTCTCTTAGAATGAATAAATAGAAGATTTGGAAGTGCCCTGCAGTGCAAGATA
AACTGAAATTCTACAGATGCATCATTGGNCTAGNTTTATCTGACATCCCTTTCTCTAAGAATTCCCCAACCCAGGCTTTT
GGCCGCTTGTACAGAGTTTAATGAAGTTGAACTGCACTGCTGGTTTCTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis