Browse Element(s) Details


Os.23045.1.S1_at

Description gb:CA756341
DB_XREF= gi:25800380
DB_XREF=BR030040000_PLATE_E10_77_082.ab1
CLONE=BR030040000_PLATE_E10_77_082.ab1
TID=Os.23045.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23045 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196631.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23045.1.S1_at--1045--131NONE
ATTACAACGATGGAGCAATTATTGC
NONE
Os.23045.1.S1_at--19--7111NONE
GTCACGCATCGATAGCTGCGATCTA
NONE
Os.23045.1.S1_at--997--1591NONE
AGCTGCGATCTATAAATCAATTGAT
NONE
Os.23045.1.S1_at--142--9791Chr01:6687419..6687447 (25 bp)
TAAGTGATTTAGATCGAATGCATAA
LOC_Os01g12240
Os.23045.1.S1_at--480--6891NONE
GTATAGATGGTGGTGAAACTCAATT
NONE
Os.23045.1.S1_at--837--91NONE
ATTCGATTCAACATTATCTCTGGGT
NONE
Os.23045.1.S1_at--385--2511NONE
AACATTATCTCTGGGTTGAACAACC
NONE
Os.23045.1.S1_at--193--7871NONE
GGTTGAACAACCTGAAAATATGCCA
NONE
Os.23045.1.S1_at--883--3851NONE
CTGAAAATATGCCAACAGCTCTTGC
NONE
Os.23045.1.S1_at--745--4391NONE
GCCAACAGCTCTTGCATTGAAACCT
NONE
Os.23045.1.S1_at--126--4831NONE
GCTCTTGCATTGAAACCTTACCATA
NONE
Target Sequence 
ATTACAACGATGGAGCAATTATTGCTCAGGCATGTCACGCATCGATAGCTGCGATCTATAAATCAATTGATGACGAATTA
ACAAAGAAGTATTTAAGTGATTTAGATCGAATGCATAAAATAACATTAGGTATAGATGGTGGTGAAACTCAATTGAATGA
ATTAAGTCAATTATTGATAGAAAATTCGATTCAACATTATCTCTGGGTTGAACAACCTGAAAATATGCCAACAGCTCTTG
CATTGAAACCTTACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis