Browse Element(s) Details


OsAffx.1987.1.S1_at

Description tigr:9629.m01184
TID=OsAffx.1987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY143875 At1g64150F22C12_10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1222011/11Uncharacterized protein family UPF0016 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1987.1.S1_at--1162--7651Chr01:6660764..6660788 (25 bp)
GGGATCTCGGTGACATCAGTACAGG
LOC_Os01g12220
OsAffx.1987.1.S1_at--359--9651Chr01:6660779..6660799 (21 bp)
TCAGTACAGGTTTCGCATCAGCTTT
LOC_Os01g12220
OsAffx.1987.1.S1_at--290--5651Chr01:6660953..6660974 (22 bp)
GACAGAACATTTTTCATCGCGGCAC
LOC_Os01g12220
OsAffx.1987.1.S1_at--809--531Chr01:6661524..6661543 (20 bp)
ATCGCGGCACTTCTAGCAGCTAGAA
LOC_Os01g12220
OsAffx.1987.1.S1_at--733--10371Chr01:6661560..6661584 (25 bp)
TTTTCTTGGCACATTTGGAGCGCTT
LOC_Os01g12220
OsAffx.1987.1.S1_at--477--8091Chr01:6661576..6661755 (25 bp)
GGAGCGCTTGCGGTAATGACAATTA
LOC_Os01g12220
OsAffx.1987.1.S1_at--909--6731Chr01:6661764..6661788 (25 bp)
GTTCTTGGACGAGCATTTCACTATG
LOC_Os01g12220
OsAffx.1987.1.S1_at--1045--6791Chr01:6661883..6661907 (25 bp)
GTTTTGGTGGCACAGATTTCCCAGT
LOC_Os01g12220
OsAffx.1987.1.S1_at--639--191Chr01:6661898..6661922 (25 bp)
ATTTCCCAGTTGATGACTTTCTTGC
LOC_Os01g12220
OsAffx.1987.1.S1_at--99--10731Chr01:6661919..6662029 (25 bp)
TTGCTGCCTGTCTTTTGGTATATTA
LOC_Os01g12220
OsAffx.1987.1.S1_at--539--71Chr01:6662109..6662133 (25 bp)
ATTGCTTGATGCAGCTTCAGGCGAT
LOC_Os01g12220
Target Sequence 
GGGATCTCGGTGACATCAGTACAGGTTTCGCATCAGCTTTTCTGTTGATCTTCTTTTCTGAGCTAGGGGACAGAACATTT
TTCATCGCGGCACTTCTAGCAGCTAGAAATTCTGGAGCGATCATTTTTCTTGGCACATTTGGAGCGCTTGCGGTAATGAC
AATTATATCTGTAGTTCTTGGACGAGCATTTCACTATGTTGATGGCATCATTCCATTTAGTTTTGGTGGCACAGATTTCC
CAGTTGATGACTTTCTTGCTGCCTGTCTTTTGGTATATTATGGAATTACTACATTGCTTGATGCAGCTTCAGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis