Browse Element(s) Details


Os.3507.1.S1_at

Description gb:AK063996.1
DB_XREF= gi:32974014
TID=Os.3507.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E12, full insert sequence.
FL= gb:AK063996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3507.1.S1_at--404--7771Chr01:6651735..6651759 (25 bp)
GGTGCACAATGTTGCTATGAATCCA
LOC_Os01g12200
Os.3507.1.S1_at--843--2191Chr01:6651763..6651787 (25 bp)
ACAAAGTTCAAGGTCCTGCCAGTCC
LOC_Os01g12200
Os.3507.1.S1_at--77--9211Chr01:6651779..6651803 (25 bp)
TGCCAGTCCACGAGCTAATCAGATC
LOC_Os01g12200
Os.3507.1.S1_at--727--5911Chr01:6651790..6651814 (25 bp)
GAGCTAATCAGATCGCTTGGCTGCC
LOC_Os01g12200
Os.3507.1.S1_at--255--3191Chr01:6651853..6651877 (25 bp)
CAATCTTTGAGCGTTGAGCCAGGTT
LOC_Os01g12200
Os.3507.1.S1_at--690--3491Chr01:6651890..6651914 (25 bp)
CATGGACAAGATGCTACCTACTGTT
LOC_Os01g12200
Os.3507.1.S1_at--875--4851Chr01:6651902..6651926 (25 bp)
GCTACCTACTGTTATGCCATATGCT
LOC_Os01g12200
Os.3507.1.S1_at--795--10131Chr01:6651921..6651945 (25 bp)
TATGCTTTCGCTACCAAATCTGGGA
LOC_Os01g12200
Os.3507.1.S1_at--103--1351Chr01:6652075..6652099 (25 bp)
AGAGTTCTTCCGGTTGATATGTGCA
NONE
Os.3507.1.S1_at--307--6511Chr01:6652090..6652114 (25 bp)
GATATGTGCAAGCTGCAGTTTCTAC
NONE
Os.3507.1.S1_at--1012--9031Chr01:6652103..6652127 (25 bp)
TGCAGTTTCTACTTGCTCAATTAAA
NONE
Target Sequence 
GGTGCACAATGTTGCTATGAATCCACCAACAAAGTTCAAGGTCCTGCCAGTCCACGAGCTAATCAGATCGCTTGGCTGCC
CCTCCACACCGAAACCAACTTATTTTGAGACTTCATCTCAATCTTTGAGCGTTGAGCCAGGTTATTTAAGATTGGCATGG
ACAAGATGCTACCTACTGTTATGCCATATGCTTTCGCTACCAAATCTGGGAGAAGGATAGCATGGATTTAGCATGATATT
TCTAAATTTTTGCCCTTTTTTTGTTGAATGATAGTGTACCAAGTCACTAATTGGTAGTACTTGCTGTATATATATGTACA
GTGATAATTTTTATAGAATAAGAGTTCTTCCGGTTGATATGTGCAAGCTGCAGTTTCTACTTGCTCAATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis