Browse Element(s) Details


Os.26807.1.S1_at

Description gb:CB618460
DB_XREF= gi:29613447
DB_XREF=OSIIEa02F23.r
CLONE=OSIIEa02F23
TID=Os.26807.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=4
UG=Os.26807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1221010/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26807.1.S1_at--769--5371Chr01:6658745..6658769 (25 bp)
GAAGACAACTATGCCAAACCACAAT
LOC_Os01g12210
Os.26807.1.S1_at--87--3071Chr01:6658774..6658798 (25 bp)
AATCTCAAGGGTTGTGTCTTTCAAG
LOC_Os01g12210
Os.26807.1.S1_at--1132--3411Chr01:6658892..6658916 (25 bp)
CAGAGGAAGCTGCATTCATGGCCTT
LOC_Os01g12210
Os.26807.1.S1_at--1026--3571Chr01:6658904..6658928 (25 bp)
CATTCATGGCCTTCCAGGGAGGTGG
LOC_Os01g12210
Os.26807.1.S1_at--1072--6831Chr01:6658955..6658979 (25 bp)
GTTTCTGATCTCATTCCAAGGATGC
LOC_Os01g12210
Os.26807.1.S1_at--335--9031Chr01:6658981..6659005 (25 bp)
TGCACTTGAAAGCACCACAGCGCTG
LOC_Os01g12210
Os.26807.1.S1_at--505--3631Chr01:6659009..6659033 (25 bp)
CTTGCAACTTTCACATCACTACTGA
LOC_Os01g12210
Os.26807.1.S1_at--373--6671Chr01:6659042..6659066 (25 bp)
GTTGCTAGGCTTGATCATTTGGTTG
LOC_Os01g12210
Os.26807.1.S1_at--733--911Chr01:6659067..6659091 (25 bp)
AGGCTGCTGAGAGGCTTGCTACGAT
LOC_Os01g12210
Os.26807.1.S1_at--854--2851NONE
AAGTGCATACTAATCTACCCAAAGC
NONE
Os.26807.1.S1_at--579--2511Chr01:6659213..6659237 (25 bp)
AACATTGTTGTTTGCTCTTTCTTGT
LOC_Os01g12210
Target Sequence 
GAAGACAACTATGCCAAACCACAATTGAAAATCTCAAGGGTTGTGTCTTTCAAGAACCAGTCCGGTGAACCAGAAAGCAA
GACAACTGAAACCAGAACACCAATGGCGATGGAAGTTGAATCCTACCATGAGATGATGAAAAGGCAGCAGAGGAAGCTGC
ATTCATGGCCTTCCAGGGAGGTGGATGATTTTGAAGATGACGAAAATGTTGTTTCTGATCTCATTCCAAGGATGCGTGCA
CTTGAAAGCACCACAGCGCTGTCACTTGCAACTTTCACATCACTACTGATTGAATTTGTTGCTAGGCTTGATCATTTGGT
TGAGGCTGCTGAGAGGCTTGCTACGATGGCAAGGTTCAAGCAGCAGATTGCAAACTAACCATTCAATGGCACTAACAGAT
TAAATACTAGCATAGTTACAGGATACAGAACTAAGTGCATACTAATCTACCCAAAGCATCAAGTGATGTAACATTGTTGT
TTGCTCTTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis