Browse Element(s) Details


OsAffx.9909.1.S1_at

Description gb:NM_188505.1
DB_XREF= gi:34904093
TID=OsAffx.9909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g121809/11expressed protein
LOC_Os11g018902/11expressed protein
LOC_Os12g019501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9909.1.S1_at--242--3931Chr01:6645202..6645226 (25 bp)
CGGCCCCGTGACAGCACAGGTTGGT
NONE
OsAffx.9909.1.S1_at--657--891Chr01:6643173..6643197 (25 bp)
AGGCGCGTTGTCCAACGTCGACTAC
NONE
OsAffx.9909.1.S1_at--182--5773Chr06:1762487..1762511 (25 bp)
GACGTCTCTGACTTCCGGGAGGTAT
NONE
OsAffx.9909.1.S1_at--485--3675Chr12:562448..562469 (22 bp)
CTGACTTCCGGGAGGTATACATCCT
LOC_Os12g01950
OsAffx.9909.1.S1_at--130--7873Chr06:1762507..1762531 (25 bp)
GGTATACATCCTCATTTATCAGTCT
NONE
OsAffx.9909.1.S1_at--231--3533Chr06:1762513..1762537 (25 bp)
CATCCTCATTTATCAGTCTAACACT
NONE
OsAffx.9909.1.S1_at--1127--7151Chr01:6642921..6642945 (25 bp)
GTCTAACACTAGCACATTCTCTGCT
LOC_Os01g12180
OsAffx.9909.1.S1_at--408--3593Chr06:1762542..1762566 (25 bp)
CATTCTCTGCTAATTGCCTGTGTTA
NONE
OsAffx.9909.1.S1_at--27--3854Chr11:484392..484415 (24 bp)
CTGCTAATTGCCTGTGTTATCAAGC
LOC_Os11g01890
OsAffx.9909.1.S1_at--316--7431Chr01:6642834..6642912 (25 bp)
GTGTTATCAAGCATGGCCGTTCTAC
LOC_Os01g12180
OsAffx.9909.1.S1_at--922--2711Chr01:6642826..6642904 (25 bp)
AAGCATGGCCGTTCTACGGCACCGG
LOC_Os01g12180
Target Sequence 
CGGCCCCGTGACAGCACAGGTTGGTGGCGAGCGAGGCGCGTTGTCCAACGTCGACTACGACCGCCTGCTCGCCCCTGTCA
AGGCGTCGCCACGGCCGCTGTCCAGGGAGGGCGAGGAGGAGGAGGGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTC
TCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGGCAACGAGGACGAATTCCACGAGGTACCTGACCCCGA
CGACGACGTCTCTGACTTCCGGGAGGTATACATCCTCATTTATCAGTCTAACACTAGCACATTCTCTGCTAATTGCCTGT
GTTATCAAGCATGGCCGTTCTACGGCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis