Browse Element(s) Details


OsAffx.32171.1.S1_x_at

Description tigr:9629.m01176
TID=OsAffx.32171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to alpha-amylasetrypsin inhibitor (antifungal protein). (maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed
LOC_Os01g12140OsAffx.9910.1.S1_x_at11/111+6612205..6612570hypothetical protein
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32171.1.S1_x_at--1091--691Chr01:6615572..6615595 (24 bp)
ATGAGGCCATTCAATGTGGACAGGG
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--938--5651Chr01:6613893..6613915 (23 bp)
GACAGGGGGCTATGCCCCGATGCCT
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--911--1851Chr01:6613763..6613787 (25 bp)
ACGACGGTGTGCATGGCCACGGCCT
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--138--9191Chr01:6613725..6613749 (25 bp)
TGCCGGATTTGTGCATCCGCGGCCA
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--124--551Chr01:6613711..6613735 (25 bp)
ATCCGCGGCCATGGTCATGGTCTTC
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--1150--7511Chr01:6613658..6613682 (25 bp)
GTGGAGACCGCCATGAGCTGCCGAA
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--698--1371Chr01:6613654..6613678 (25 bp)
AGACCGCCATGAGCTGCCGAATTTT
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--382--1571Chr01:6613643..6613667 (25 bp)
AGCTGCCGAATTTTCGTGGCTTTGG
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--1111--7531Chr01:6613628..6613652 (25 bp)
GTGGCTTTGGCGTCGGTCTTCCTCC
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--738--8491Chr01:6613627..6613651 (25 bp)
TGGCTTTGGCGTCGGTCTTCCTCCC
LOC_Os01g12150
OsAffx.32171.1.S1_x_at--722--9151Chr01:6613571..6613595 (25 bp)
TGCCCATCCGCTCCCGGGAAGGAGA
LOC_Os01g12150
Target Sequence 
ATGAGGCCATTCAATGTGGACAGGGGGCTATGCCCCGATGCCTACAGCTACGCCAAGGACGACCAGACCAGCACCTTCAC
CTGCCCCACCAGCACCAACTACCGCGTGGACTTCTGCCCGCCGATGAGCGGCGTGACGGCCGGCGACGACGACGGTGTGC
ATGGCCACGGCCTCCCGCGGCTGAGCTGCCGGATTTGTGCATCCGCGGCCATGGTCATGGTCTTCCTCCCGCCGCCGGCC
GCGGCCTCCCACGGTGGAGACCGCCATGAGCTGCCGAATTTTCGTGGCTTTGGCGTCGGTCTTCCTCCCGCCGCCGAGCT
CGCCTGCTCCGCCGCCCACCTGCCCATCCGCTCCCGGGAAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32171.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis