Browse Element(s) Details


Os.27838.1.S1_at

Description gb:NM_188501.1
DB_XREF= gi:34904085
TID=Os.27838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1213011/11nodulin MtN3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed
LOC_Os01g12140OsAffx.9910.1.S1_x_at11/111+6612205..6612570hypothetical protein
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27838.1.S1_at--1132--9871Chr01:6610378..6610402 (25 bp)
TACATCTTAGCTCTGTTCAACTGCC
LOC_Os01g12130
Os.27838.1.S1_at--398--2551Chr01:6610360..6610384 (25 bp)
AACTGCCTCCTGTACACATGGTATG
LOC_Os01g12130
Os.27838.1.S1_at--534--9271Chr01:6610303..6610355 (25 bp)
TCCTGTATGTCTTCCATCAATGGGC
LOC_Os01g12130
Os.27838.1.S1_at--458--371Chr01:6610288..6610312 (25 bp)
ATCAATGGGCTTGGCATACTGCTTG
LOC_Os01g12130
Os.27838.1.S1_at--171--10831Chr01:6610116..6610140 (25 bp)
TTGTGTTGCGAATGGTGCTACCCGT
LOC_Os01g12130
Os.27838.1.S1_at--238--9591Chr01:6610091..6610115 (25 bp)
TCTTGCATTCTTTGCGCTGACAGCA
LOC_Os01g12130
Os.27838.1.S1_at--65--2711Chr01:6610058..6610082 (25 bp)
AAGCTTTCTGTTTCATACGCACGGT
LOC_Os01g12130
Os.27838.1.S1_at--1016--4471Chr01:6610005..6610029 (25 bp)
GCCTGGTGGCTTCCATATCGATGTA
LOC_Os01g12130
Os.27838.1.S1_at--357--10151Chr01:6609990..6610014 (25 bp)
TATCGATGTACAGCTCTCCAATGGT
LOC_Os01g12130
Os.27838.1.S1_at--1027--1071Chr01:6609457..6609478 (22 bp)
AGGGAAGGATCTCTTCATCGCGTCA
LOC_Os01g12130
Os.27838.1.S1_at--584--10871Chr01:6609319..6609343 (25 bp)
TTGGCTGTCCAATGGGTATCCTTCA
LOC_Os01g12130
Target Sequence 
TACATCTTAGCTCTGTTCAACTGCCTCCTGTACACATGGTATGGGCTTCCTGTATGTCTTCCATCAATGGGCTTGGCATA
CTGCTTGAGATCGCATTCATCAGCATATACACATGGTTTGCACCCAGAGAAAGAAAGGCAAAAGTTTGTGTTGCGAATGG
TGCTACCCGTTCTTGCATTCTTTGCGCTGACAGCAATTTTTTCAAGCTTTCTGTTTCATACGCACGGTTTACGCAAAGTT
TTTGTGGGTAGTATTGGCCTGGTGGCTTCCATATCGATGTACAGCTCTCCAATGGTAGCTGCAAAACAAGTCATAACAAC
AAAAAGTGTGGAGTTCATGCCCTTCTACCTGTCATTGTTTTCCTTCCTCTCCAGTGCTCTATGGATGATATATGGGCTTC
TAGGGAAGGATCTCTTCATCGCGTCACCAAACTTCATTGGCTGTCCAATGGGTATCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis