Browse Element(s) Details


Os.54460.1.A1_at

Description gb:AK105221.1
DB_XREF= gi:32990430
TID=Os.54460.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E09, full insert sequence.
FL= gb:AK105221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g121001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54460.1.A1_at--932--10191Chr01:6584665..6584689 (25 bp)
TATTAGTACTAATCACGAGAGCAAG
LOC_Os01g12100
Os.54460.1.A1_at--114--731Chr01:6584123..6584147 (25 bp)
ATGATTTCTGGATGATCCTGGCCGT
NONE
Os.54460.1.A1_at--625--3491Chr01:6584097..6584121 (25 bp)
CATGGCCGCGGATGCTTCTTGTGAT
NONE
Os.54460.1.A1_at--310--4691Chr01:6584090..6584114 (25 bp)
GCGGATGCTTCTTGTGATCACGTTA
NONE
Os.54460.1.A1_at--316--7391Chr01:6584077..6584101 (25 bp)
GTGATCACGTTATCTTGTTTAATTA
NONE
Os.54460.1.A1_at--156--10191Chr01:6584032..6584056 (25 bp)
TATAGTACTGTAATTCCTCCTCCAT
NONE
Os.54460.1.A1_at--937--7071Chr01:6584023..6584047 (25 bp)
GTAATTCCTCCTCCATGCAGATCAT
NONE
Os.54460.1.A1_at--482--1271Chr01:6584005..6584029 (25 bp)
AGATCATCCCAATAGCATCATTGTG
NONE
Os.54460.1.A1_at--1085--3551Chr01:6583990..6584014 (25 bp)
CATCATTGTGTGTGTCTGCAGTCTG
NONE
Os.54460.1.A1_at--997--7171Chr01:6583977..6584001 (25 bp)
GTCTGCAGTCTGTAAAGCTATATTG
NONE
Os.54460.1.A1_at--479--5231Chr01:6583950..6583974 (25 bp)
GAATAAATGATGCTCCTACGTTATC
NONE
Target Sequence 
TATTAGTACTAATCACGAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCNGNNNNNNNNCNNNNNNCNNNNNNNNG
NNTGGTGNCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCNAACTCCGACTCGGACTCGGACTCCGACTGCGACTCG
GACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATG
ATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGG
GGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAG
CTATATTGATGAATAAATGATGCTCCTACGTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54460.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis