Browse Element(s) Details


Os.12263.1.S1_at

Description gb:BI811697
DB_XREF= gi:16577602
DB_XREF=A003A12
CLONE=A003A12
TID=Os.12263.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489G09.23 (P0489G09.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1208011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12263.1.S1_at--712--8851Chr01:6569440..6569464 (25 bp)
TGAGAACTACGCAGGTACTCCTTTC
LOC_Os01g12080
Os.12263.1.S1_at--249--171Chr01:6569397..6569421 (25 bp)
ATTTTACTTGATTCCCCAGACCAGA
LOC_Os01g12080
Os.12263.1.S1_at--299--3251Chr01:6569243..6569267 (25 bp)
CAACGGGCCTTCACAATCAGACGAA
LOC_Os01g12080
Os.12263.1.S1_at--638--6711Chr01:6569200..6569224 (25 bp)
GTTTCAGACTAAAGGCCTGGCCGGC
LOC_Os01g12080
Os.12263.1.S1_at--907--7291Chr01:6569174..6569198 (25 bp)
GTGCCCATCTCATGTAGTGTAACCT
LOC_Os01g12080
Os.12263.1.S1_at--510--5191Chr01:6569099..6569123 (25 bp)
GCAATCGGCATGTACTGTTGTCGCT
LOC_Os01g12080
Os.12263.1.S1_at--601--7691Chr01:6569056..6569080 (25 bp)
GGGTCAATCCTAATTCTTTCCAATA
LOC_Os01g12080
Os.12263.1.S1_at--356--6771Chr01:6568980..6569004 (25 bp)
GTTAAACCTCATGAACTCTCTCTGT
LOC_Os01g12080
Os.12263.1.S1_at--753--751Chr01:6568910..6568934 (25 bp)
ATGTCTCCTCTAGCCGGAAAAGTTT
LOC_Os01g12080
Os.12263.1.S1_at--1151--6851Chr01:6568889..6568913 (25 bp)
GTTTGTTTTCCTCTCGAGACTTCGA
LOC_Os01g12080
Os.12263.1.S1_at--128--6172Chr08:25107225..25107461 (25 bp)
GAGGATGTCCCCTTGTTTTTACGTG
NONE
Target Sequence 
TGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTCCGACATTTTACTTGATTCCCCAGACCAGAATGACATAGTTG
AGTACTTTGCTGATGCCATCAACGGGCCTTCACAATCAGACGAAGAGAAGTAACAGAAGAGAGTTTCAGACTAAAGGCCT
GGCCGGCCGTGCCCATCTCATGTAGTGTAACCTTGCAGAGAAATTGTGACAGAATTCTAACTGTAGATGCGCATGGTGGT
GCGGCAATCGGCATGTACTGTTGTCGCTGCTGAAGAATTTTGTAGGGGGTCAATCCTAATTCTTTCCAATAAACAGTAGG
GCAGATTAAGCAGCTGGCTACAAGGATCAAAAGTTTACAGATGTTAAACCTCATGAACTCTCTCTGTAATTGNTAAAGAA
GTGAACTGTTCATGTGGACCTGCACATTTTCCATGTCTCCTCTAGCCGGAAAAGTTTGTTTTCCTCTCGAGACTTCGAGA
GGATGTCCCCTTGTTTTTACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis