Browse Element(s) Details


OsAffx.1988.1.S1_at

Description tigr:9629.m01186
TID=OsAffx.1988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1988.1.S1_at--906--9711Chr01:6686547..6686568 (22 bp)
TCAACCGTTCTAGCCGGTGGTGAAA
LOC_Os01g12240
OsAffx.1988.1.S1_at--542--4491NONE
GCCGGTGGTGAAATAACTCTCGTAT
NONE
OsAffx.1988.1.S1_at--56--2551Chr01:6687594..6687618 (25 bp)
AACTCTCGTATGCATATATAGTGGA
LOC_Os01g12240
OsAffx.1988.1.S1_at--264--2451Chr01:6687632..6687656 (25 bp)
AAAATCCTAATGTCCTCACAGGAAA
LOC_Os01g12240
OsAffx.1988.1.S1_at--340--2131Chr01:6688708..6688732 (25 bp)
ACAGGACGGTATCCCATTCGGATGG
LOC_Os01g12240
OsAffx.1988.1.S1_at--365--3571Chr01:6688722..6688746 (25 bp)
CATTCGGATGGAACGATACCTCTAA
LOC_Os01g12240
OsAffx.1988.1.S1_at--207--311NONE
ATACCTCTAAGGGATTTGATTTCTC
NONE
OsAffx.1988.1.S1_at--567--7671Chr01:6689408..6689432 (25 bp)
GGGATTTGATTTCTCCAGCTCACAG
LOC_Os01g12240
OsAffx.1988.1.S1_at--950--3391NONE
CAGCTCACAGTTTACGGTGCAGGCT
NONE
OsAffx.1988.1.S1_at--1071--5071Chr01:6690228..6690252 (25 bp)
GCAGCCACTGCCCAAATGAAGGTTG
LOC_Os01g12240
OsAffx.1988.1.S1_at--493--1471Chr01:6690500..6690631 (25 bp)
AGAATTTCACTCTGTTTAACGATGA
LOC_Os01g12240
Target Sequence 
TCAACCGTTCTAGCCGGTGGTGAAATAACTCTCGTATGCATATATAGTGGAGGTTATATTAACAAAAATCCTAATGTCCT
CACAGGAAATTTATTTCCATTTTTCTGGGAAATGCTACAGGACGGTATCCCATTCGGATGGAACGATACCTCTAAGGGAT
TTGATTTCTCCAGCTCACAGTTTACGGTGCAGGCTGCAGCCACTGCCCAAATGAAGGTTGCATGGGAGGTATCAGGAAAA
GAGATCCCATATTACTCTATAATCTATGTCTTGAGTAAATCATATCAGAATTTCACTCTGTTTAACGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis