Browse Element(s) Details


Os.17038.2.S1_at

Description gb:AK068883.1
DB_XREF= gi:32978908
TID=Os.17038.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170M12, full insert sequence.
FL= gb:AK068883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122801/11hAT dimerisation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17038.2.S1_at--124--10411NONE
TTTTGATGGCCCTTTCTTGTCCCTG
NONE
Os.17038.2.S1_at--797--10771NONE
TTGATGGCCCTTTCTTGTCCCTGAA
NONE
Os.17038.2.S1_at--318--8851NONE
TGATGGCCCTTTCTTGTCCCTGAAT
NONE
Os.17038.2.S1_at--657--871NONE
ATGGCCCTTTCTTGTCCCTGAATGA
NONE
Os.17038.2.S1_at--480--8471NONE
TGGCCCTTTCTTGTCCCTGAATGAT
NONE
Os.17038.2.S1_at--268--4551NONE
GCCCTTTCTTGTCCCTGAATGATCA
NONE
Os.17038.2.S1_at--1120--4291NONE
CCTTTCTTGTCCCTGAATGATCATA
NONE
Os.17038.2.S1_at--400--10331NONE
TTTCTTGTCCCTGAATGATCATAGA
NONE
Os.17038.2.S1_at--421--9591NONE
TCTTGTCCCTGAATGATCATAGAAA
NONE
Os.17038.2.S1_at--48--10811NONE
TTGTCCCTGAATGATCATAGAAAGA
NONE
Os.17038.2.S1_at--317--7251Chr01:6702630..6702651 (22 bp)
GTCCCTGAATGATCATAGAAAGATG
LOC_Os01g12280
Target Sequence 
TTTTGATGGCCCTTTCTTGTCCCTGAATGATCATAGAAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17038.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis